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rs9989419

From SNPedia

Orientationplus
Stabilizedplus
Make rs9989419(A;A)
Make rs9989419(A;G)
Make rs9989419(G;G)
ReferenceGRCh38 38.1/141
Chromosome16
Position56951227
is asnp
is mentioned by
dbSNPrs9989419
ebirs9989419
HLIrs9989419
Exacrs9989419
Varsomers9989419
Maprs9989419
PheGenIrs9989419
hapmaprs9989419
1000 genomesrs9989419
hgdprs9989419
ensemblrs9989419
gopubmedrs9989419
geneviewrs9989419
scholarrs9989419
googlers9989419
pharmgkbrs9989419
gwascentralrs9989419
openSNPrs9989419
23andMers9989419
23andMe allrs9989419
SNP Nexus

SNPshotrs9989419
SNPdbers9989419
MSV3drs9989419
GWAS Ctlgrs9989419
GMAF0.3893
Max Magnitude
? (A;A) (A;G) (G;G) 28
GWAS snp
PMID [PMID 18193043]
Trait HDL cholesterol
Title Newly identified loci that influence lipid concentrations and risk of coronary artery disease
Risk Allele G
P-val 2.9999999999999998E-31
Odds Ratio 1.72 [NR] mg/dl higher
GWAS snp
PMID [PMID 20031538]
Trait HDL cholesterol
Title Genome-Wide Association Analysis of High-Density Lipoprotein Cholesterol in the Population-Based KORA Study Sheds New Light on Intergenic Regions
Risk Allele A
P-val 9E-27
Odds Ratio 2.66 [NR] mg/dl decrease
GWAS snp
PMID [PMID 20864672OA-icon.png]
Trait
Title Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease
Risk Allele G
P-val 1E-32
Odds Ratio 0.04 [0.03-0.05] unit increase


[PMID 18179892OA-icon.png] Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.


[PMID 19041386OA-icon.png] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.


[PMID 20018038OA-icon.png] Evaluation of genetic risk scores for lipid levels using genome-wide markers in the Framingham Heart Study.


[PMID 20031564OA-icon.png] Polymorphism in the CETP gene region, HDL cholesterol, and risk of future myocardial infarction: Genomewide analysis among 18 245 initially healthy women from the Women's Genome Health Study.


[PMID 20370913OA-icon.png] Genome-wide association analysis of total cholesterol and high-density lipoprotein cholesterol levels using the Framingham heart study data.


[PMID 20694148OA-icon.png] A genome-wide association study of the metabolic syndrome in Indian Asian men.


GET Evidence
rs9989419
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.5625
summary



[PMID 24283500OA-icon.png] CETP gene polymorphisms and risk of coronary atherosclerosis in a Chinese population

GWAS snp
PMID [PMID 24023261OA-icon.png]
Trait Lipid traits
Title THOC5: a novel gene involved in HDL-cholesterol metabolism.
Risk Allele A
P-val 5E-11
Odds Ratio 6.57 unit decrease