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Alzheimer's disease, gene set

From SNPedia

[PMID 28323831] created a polygenic hazard score to arrive at age of onset of AD using the large IGAP dataset and other replications.

SNP Chromosome Gene Minor Allele Risk Allele Beta log HR Inside the gene?
epsilon 2 19 APOE e2=0.07 -- -0.47 Yes
epsilon 4 19 APOE e4=0.14 e4 1.03 Yes
rs4266886 1 CR1 T=0.1426/714 T -0.09 intron
rs61822977 1 CR1 A=0.4091/2049 G -0.08 intron
rs6733839 2 BIN1 T=0.3950/1978 T -0.15 intron
rs10202748 2 INPP5D C=0.2704/1354 C -0.06 intron
rs115124923 6 HLA-DRB5 A=0.1554/778 A 0.17 No
rs115675626 6 HLA-DQB1 A=0.1104/553 A -0.11 No
rs1109581 6 GPR115 T=0.2452/1228 T -0.07 Intron
rs17265593 7 BCO43356 T=0.2726/1365 T 0.23 No
rs259283 7 BCO43356 A=0.3385/1695 C 0.28 Intron
rs1476679 7 ZCWPW1 C=0.2115/1059 C 0.11 Intron
rs78571833 7 AL833583 EPHA1-AS1 C=0.0250/125 C 0.14 Intron
rs12679874 8 PTK2B G=0.4555/2281 G -0.09 Intron
rs2741342 8 CHRNA2 T=0.2941/1473 T 0.09 Intron
rs7831810 8 CLU A=0.4012/2009 G 0.09 Intron
rs1532277 8 CLU T=0.2360/1182 T 0.21 Intron
rs9331888 8 CLU G=0.3335/1670 G 0.16 Intron
rs7920721 10 CR5950071 G=0.2698/1351 G -0.07 Intron
rs3740688 11 SPI1 G=0.3608/1807 G 0.07 Intron
rs7116190 11 MS4A6A A=0.2879/1442 A 0.08 No
rs526904 11 PICALM T=0.3263/1634 T -0.20 No
rs543293 11 PICALM A=0.2923/1464 A 0.30 No
rs11218343 11 SORL1 C=0.1090/546 C 0.18 Intron
rs6572869 14 FERMT2 A=0.2754/1379 A -0.11 Intron
rs12590273 14 SLC24A4 C=0.0917/459 C 0.10 Intron
rs7145100 14 abParts C=0.1460/731 C 0.08 Yes
rs74615166 15 TRIP4 C=0.0074/37 C -0.23 Intron
rs2526378 17 BZRAP1 A=0.4722/2365 G 0.09 Intron
rs117481827 19 C19orf6 C=0.0469/235 C -0.09 Yes, RNA noncoding
rs7408475 19 ABCA7 G=0.2608/1306 G 0.18 Intron
rs3752246 19 ABCA7 G=0.1745/874 G -0.25 3' UTR
rs7274581 20 CASS4 C=0.0940/471 C 0.10 Intron