Gs1009
From SNPedia
| Gs1009 | |
|---|---|
| Magnitude | 1.2 |
| Repute | |
| Summary | Mitochondrial Haplogroup H1c2 |
| Criteria | Gs1009/criteria |
This is the genoset for a mitochondrial DNA haplogroup. H1c2 is a subclade of H1c. It is found in Northern Europe.
H1c2 is defined by a C>T transition at 12858. Because the 23andMe V2 chip does not include the H1c criteria an H1c2 assignment with that SNP set should be considered only tentative.
Contents
Criteria[edit]
- Defining SNPs for N
- A10398A, rs2853826(A;A)
- T10873T, rs2857284(T;T)
- G15301G, rs28573847(G;G) OR i3001523(G;G)
- A8701A, i3000759(A;A)
- T9540T, rs2248727(T;T) OR i3001497(T;T)
This will be set to require only one of these as confirmation of downstream N status.
- Defining SNPs for R
- C12705C, rs2854122(C;C)
- C16223C
Nether of these is on the 23andMe V2 Chip.
- Defining SNPs for R0
- G11719G, rs2853495(G;G) OR i3001044(G;G)
- A73A, i3001587(A;A)
73A will be excluded downstream of HV as it frequently back mutates.
- Defining SNPs for HV
- C14766C
This is not on the 23andMe V2 Chip.
- Defining SNPs for H
- A2706A, rs2854128(A;A)
- C7028C, rs2015062(C;C)
This will be set to require only one of these to confirm H status.
- Defining SNPs for H1
- G3010A, rs3928306(A;A)
- Defining SNPs for H1c
- C477T
- Defining SNPs for H1c2
- C12858T, i4001275(T;T)
Criteria Code[edit]
and(
gs1001,
rs3928306(A;A),
i4001275(T;T),
)
See Also[edit]
