rs10054504

Orientation

plus

Stabilized

plus

Make rs10054504(C;C)

Make rs10054504(C;T)

Make rs10054504(T;T)

Reference

GRCh38 38.1/141

Chromosome

5

Position

32000377

Gene

PDZD2

is a	snp
is	mentioned by
dbSNP	rs10054504
dbSNP (classic)	rs10054504
ClinGen	rs10054504
ebi	rs10054504
HLI	rs10054504
Exac	rs10054504
Gnomad	rs10054504
Varsome	rs10054504
LitVar	rs10054504
Map	rs10054504
PheGenI	rs10054504
Biobank	rs10054504
1000 genomes	rs10054504
hgdp	rs10054504
ensembl	rs10054504
geneview	rs10054504
scholar	rs10054504
google	rs10054504
pharmgkb	rs10054504
gwascentral	rs10054504
openSNP	rs10054504
23andMe	rs10054504
SNPshot	rs10054504
SNPdbe	rs10054504
MSV3d	rs10054504
GWAS Ctlg	rs10054504

GMAF

0.4155

Max Magnitude

0

?	(C;C) (C;T) (T;T)	28

GWAS snp
PMID	[PMID 23184150]
Trait	Renal cell carcinoma
Title	Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.
Risk Allele
P-val	8E-7
Odds Ratio	1.37 [1.19-1.58]

The second strongest signal was provided by rs10054504 which maps to chromosome 5p13.3 (32 000 483 bps; NCBI build 37), within intron 4 of the PDZD2 gene (PDZ domain-containing 2; MIM: 610697), but did not achieve genome-wide significance (P = 7.68 × 10−7; Phet = 0.06, I2 = 57%)[PMID 23184150]