rs13149290
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 1.5 | Slightly increased risk of developing prostate cancer |
(C;T) | 1.5 | Slightly increased risk of developing prostate cancer |
(T;T) | 1 | Normal risk of developing prostate cancer |
Reference | GRCh38 38.1/141 |
Chromosome | 4 |
Position | 145829814 |
Gene | ZNF827 |
is a | snp |
is | mentioned by |
dbSNP | rs13149290 |
dbSNP (classic) | rs13149290 |
ClinGen | rs13149290 |
ebi | rs13149290 |
HLI | rs13149290 |
Exac | rs13149290 |
Gnomad | rs13149290 |
Varsome | rs13149290 |
LitVar | rs13149290 |
Map | rs13149290 |
PheGenI | rs13149290 |
Biobank | rs13149290 |
1000 genomes | rs13149290 |
hgdp | rs13149290 |
ensembl | rs13149290 |
geneview | rs13149290 |
scholar | rs13149290 |
rs13149290 | |
pharmgkb | rs13149290 |
gwascentral | rs13149290 |
openSNP | rs13149290 |
23andMe | rs13149290 |
SNPshot | rs13149290 |
SNPdbe | rs13149290 |
MSV3d | rs13149290 |
GWAS Ctlg | rs13149290 |
GMAF | 0.416 |
Max Magnitude | 1.5 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
rs13149290 is one of seven SNPs found in a combined study of over 1,000 patients to be associated with increased risk for prostate cancer. The risk allele for this SNP is (C); and while the odds ratio was not specifically reported, the probability of false significance (not permuted though) was given as p=2.5 x 10e-5, using a dominant model of risk.[PMID 18073375]
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 4
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip NatGeo2
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d