rs1408799
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 |
| Make rs1408799(C;T) |
| Make rs1408799(T;T) |
| Reference | GRCh37 37.1/131 |
| Chromosome | 9 |
| Position | 12672097 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1408799 |
| dbSNP (classic) | rs1408799 |
| ClinGen | rs1408799 |
| ebi | rs1408799 |
| HLI | rs1408799 |
| Exac | rs1408799 |
| Gnomad | rs1408799 |
| Varsome | rs1408799 |
| LitVar | rs1408799 |
| Map | rs1408799 |
| PheGenI | rs1408799 |
| Biobank | rs1408799 |
| 1000 genomes | rs1408799 |
| hgdp | rs1408799 |
| ensembl | rs1408799 |
| geneview | rs1408799 |
| scholar | rs1408799 |
| rs1408799 | |
| pharmgkb | rs1408799 |
| gwascentral | rs1408799 |
| openSNP | rs1408799 |
| 23andMe | rs1408799 |
| SNPshot | rs1408799 |
| SNPdbe | rs1408799 |
| MSV3d | rs1408799 |
| GWAS Ctlg | rs1408799 |
| GMAF | 0.3499 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS | |
|---|---|
| SNP | rs1408799 |
| PubMedID | [PMID 18488028] |
| Condition | Blue vs. green eyes |
| Gene | TYRP1 |
| Risk Allele | C |
| pValue | 6.00E-017 |
| OR | 1.4 |
| 95% CI | 1.25-1.57 |
[PMID 19384953
] Genetic variants in pigmentation genes, pigmentary phenotypes, and risk of skin cancer in Caucasians
| GWAS snp | |
|---|---|
| PMID | [PMID 23548203]
|
| Trait | Eye color |
| Title | Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans. |
| Risk Allele | C |
| P-val | 5E-7 |
| Odds Ratio | .27 [0.17-0.37] unit decrease |
