rs2144300
| Orientation | plus |
| Stabilized | plus |
| Make rs2144300(C;C) |
| Make rs2144300(C;T) |
| Make rs2144300(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 1 |
| Position | 230159169 |
| Gene | GALNT2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2144300 |
| dbSNP (classic) | rs2144300 |
| ClinGen | rs2144300 |
| ebi | rs2144300 |
| HLI | rs2144300 |
| Exac | rs2144300 |
| Gnomad | rs2144300 |
| Varsome | rs2144300 |
| LitVar | rs2144300 |
| Map | rs2144300 |
| PheGenI | rs2144300 |
| Biobank | rs2144300 |
| 1000 genomes | rs2144300 |
| hgdp | rs2144300 |
| ensembl | rs2144300 |
| geneview | rs2144300 |
| scholar | rs2144300 |
| rs2144300 | |
| pharmgkb | rs2144300 |
| gwascentral | rs2144300 |
| openSNP | rs2144300 |
| 23andMe | rs2144300 |
| SNPshot | rs2144300 |
| SNPdbe | rs2144300 |
| MSV3d | rs2144300 |
| GWAS Ctlg | rs2144300 |
| GMAF | 0.3558 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS | |
|---|---|
| SNP | rs2144300 |
| PubMedID | [PMID 18193043 ]
|
| Condition | HDL cholesterol |
| Gene | GALNT2 |
| Risk Allele | T |
| pValue | 3.00E-014 |
| OR | 1.11 |
| 95% CI | NR) mg/dl highe |
[PMID 21933382] Association of the GALNT2 gene polymorphisms and several environmental factors with serum lipid levels in the Mulao and Han populations
[PMID 18852197] Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants.
[PMID 19041386] Genetic-epidemiological evidence on genes associated with HDL cholesterol levels: a systematic in-depth review.
[PMID 19060911] Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.
[PMID 19185284] Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.
[PMID 19435741] Common lipid-altering gene variants are associated with therapeutic intervention thresholds of lipid levels in older people.
[PMID 19822575] Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing.
[PMID 21347282] Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
| GWAS snp | |
|---|---|
| PMID | [PMID 23620142]
|
| Trait | Circulating myeloperoxidase levels (serum) |
| Title | Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia. |
| Risk Allele | C |
| P-val | 3E-6 |
| Odds Ratio | .05 [0.030-0.070] unit decrease |
[PMID 23832694] Common genetic variants associated with lipid profiles in a Chinese pediatric population.
[PMID 24116192] Atenolol induced HDL-C change in the pharmacogenomic evaluation of antihypertensive responses (PEAR) study
[PMID 33171515] GALNT2 Gene Variant rs4846914 Is Associated with Insulin and Insulin Resistance Depending on BMI in PCOS Patients: a Case-Control Study.
