rs5015480
Orientation | plus |
Stabilized | plus |
Make rs5015480(C;C) |
Make rs5015480(C;T) |
Make rs5015480(T;T) |
Reference | GRCh38 38.1/142 |
Chromosome | 10 |
Position | 92705802 |
is a | snp |
is | mentioned by |
dbSNP | rs5015480 |
dbSNP (classic) | rs5015480 |
ClinGen | rs5015480 |
ebi | rs5015480 |
HLI | rs5015480 |
Exac | rs5015480 |
Gnomad | rs5015480 |
Varsome | rs5015480 |
LitVar | rs5015480 |
Map | rs5015480 |
PheGenI | rs5015480 |
Biobank | rs5015480 |
1000 genomes | rs5015480 |
hgdp | rs5015480 |
ensembl | rs5015480 |
geneview | rs5015480 |
scholar | rs5015480 |
rs5015480 | |
pharmgkb | rs5015480 |
gwascentral | rs5015480 |
openSNP | rs5015480 |
23andMe | rs5015480 |
SNPshot | rs5015480 |
SNPdbe | rs5015480 |
MSV3d | rs5015480 |
GWAS Ctlg | rs5015480 |
GMAF | 0.4605 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
[PMID 17928989] associated with type-2 diabetes, but then called into question by 10.1371/journal.pbio.1000294 along with rs9300039 rs4402960 rs7754840 rs17044137 rs11037909 rs1081161 rs1111875 rs7923837 rs12885713 rs1219648 rs2981582
GWAS | |
---|---|
SNP | rs5015480 |
PubMedID | [PMID 17463249] |
Condition | Type 2 diabetes |
Gene | HHEX |
Risk Allele | C |
pValue | 6.00E-010 |
OR | 1.13 |
95% CI | 1.08-1.17 |
GWAS snp | |
---|---|
PMID | [PMID 18372903] |
Trait | Type 2 diabetes |
Title | Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes |
Risk Allele | C |
P-val | 7.0000000000000005E-8 |
Odds Ratio | 1.17 [1.11-1.24] |
[PMID 19622614] HHEX-IDE polymorphism is associated with low birth weight in offspring with a family history of type 1 diabetes
[PMID 20503258] Candidate gene association study conditioning on individual ancestry in patients with type 2 diabetes and metabolic syndrome from Mexico City
GWAS snp | |
---|---|
PMID | [PMID 20581827] |
Trait | Type 2 diabetes |
Title | Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis |
Risk Allele | C |
P-val | 1E-15 |
Odds Ratio | 1.18 [1.13-1.23] |
GWAS snp | |
---|---|
PMID | [PMID 20862305] |
Trait | |
Title | Identification of new genetic risk variants for type 2 diabetes |
Risk Allele | C |
P-val | 0.000009 |
Odds Ratio | 1.17 [1.11-1.24] |
[PMID 22558147] Lack of Association of Type 2 Diabetes Susceptibility Genotypes and Body Weight on the Development of Islet Autoimmunity and Type 1 Diabetes
[PMID 17786212] Heterogeneity in meta-analyses of genome-wide association investigations.
[PMID 18426861] Association analysis of type 2 diabetes Loci in type 1 diabetes.
[PMID 18443202] Association analysis in african americans of European-derived type 2 diabetes single nucleotide polymorphisms from whole-genome association studies.
[PMID 18469204] Implication of genetic variants near TCF7L2, SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, and FTO in type 2 diabetes and obesity in 6,719 Asians.
[PMID 18633108] Common variants in CDKAL1, CDKN2A/B, IGF2BP2, SLC30A8, and HHEX/IDE genes are associated with type 2 diabetes and impaired fasting glucose in a Chinese Han population.
[PMID 19002430] Type 2 diabetes-associated genetic variants discovered in the recent genome-wide association studies are related to gestational diabetes mellitus in the Korean population.
[PMID 19056611] Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.
[PMID 19207020] Meta-analysis in genome-wide association studies.
[PMID 19323962] Genome-wide association studies in type 2 diabetes.
[PMID 19526209] Is the thrifty genotype hypothesis supported by evidence based on confirmed type 2 diabetes- and obesity-susceptibility variants?
[PMID 19602701] Underlying genetic models of inheritance in established type 2 diabetes associations.
[PMID 19741467] Association of common type 2 diabetes risk gene variants and posttransplantation diabetes mellitus in renal allograft recipients in Korea.
[PMID 19931040] Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies.
[PMID 20017978] Influence of control selection in genome-wide association studies: the example of diabetes in the Framingham Heart Study.
[PMID 20018041] The effect of multiple genetic variants in predicting the risk of type 2 diabetes.
[PMID 20126254] Rare variants create synthetic genome-wide associations.
[PMID 20144327] A genomics study of type 2 diabetes mellitus in U.S. Air Force personnel.
[PMID 20509872] Implication of genetic variants near SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, FTO, TCF2, KCNQ1, and WFS1 in type 2 diabetes in a Chinese population.
[PMID 20532014] The epidemiology of diabetes in Korea: from the economics to genetics.
[PMID 20550665] Association study of genetic variants in eight genes/loci with type 2 diabetes in a Han Chinese population.
[PMID 21368910] Heterogeneity of genetic associations of CDKAL1 and HHEX with susceptibility of type 2 diabetes mellitus by gender.
[PMID 22377712] Association between type 2 diabetes genetic susceptibility loci and visceral and subcutaneous fat area as determined by computed tomography.
GWAS snp | |
---|---|
PMID | [PMID 22693455] |
Trait | |
Title | Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases. |
Risk Allele | C |
P-val | 2E-9 |
Odds Ratio | 1.1800 None |
[PMID 24112421] CDKAL1 and HHEX are associated with type-2 diabetes-related traits among Yup'ik people
[PMID 24371822] IRS1, TCF7L2, ADRB1, PPARG, and HHEX Polymorphisms Associated with Atherogenic Risk in Mexican Population
[PMID 23298195] Association study of genetic variants of 17 diabetes-related genes/loci and cardiovascular risk and diabetic nephropathy in the Chinese She population.
[PMID 23462794] Identification of CpG-SNPs associated with type 2 diabetes and differential DNA methylation in human pancreatic islets.
[PMID 29720110] Effect of smoking on the association of HHEX (rs5015480) with diabetes among Korean women and heavy smoking men.