rs5945572
Associated with prostate cancer risk |
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) |
Make rs5945572(A;G) |
Make rs5945572(G;G) |
Reference | GRCh38 38.1/141 |
Chromosome | X |
Position | 51486831 |
is a | snp |
is | mentioned by |
dbSNP | rs5945572 |
dbSNP (classic) | rs5945572 |
ClinGen | rs5945572 |
ebi | rs5945572 |
HLI | rs5945572 |
Exac | rs5945572 |
Gnomad | rs5945572 |
Varsome | rs5945572 |
LitVar | rs5945572 |
Map | rs5945572 |
PheGenI | rs5945572 |
Biobank | rs5945572 |
1000 genomes | rs5945572 |
hgdp | rs5945572 |
ensembl | rs5945572 |
geneview | rs5945572 |
scholar | rs5945572 |
rs5945572 | |
pharmgkb | rs5945572 |
gwascentral | rs5945572 |
openSNP | rs5945572 |
23andMe | rs5945572 |
SNPshot | rs5945572 |
SNPdbe | rs5945572 |
MSV3d | rs5945572 |
GWAS Ctlg | rs5945572 |
GMAF | 0.2382 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
Associated with prostate cancer [PMID 18264098][PMID 18774487]
GWAS | |
---|---|
SNP | rs5945572 |
PubMedID | [PMID 18264098] |
Condition | Prostate cancer |
Gene | NUDT10, NUDT11, LOC340602, GSPT2, MAGED1 |
Risk Allele | A |
pValue | 4.00E-013 |
OR | 1.23 |
95% CI | 1.16-1.30 |
[PMID 19549809] Fine-Mapping and Family-Based Association Analyses of Prostate Cancer Risk Variants at Xp11
[PMID 19902474] Replication of prostate cancer risk loci on 8q24, 11q13, 17q12, 19q33, and Xp11 in African Americans
[PMID 20651075] Prostate Cancer Susceptibility Variants Confer Increased Risk of Disease Progression
[PMID 18708398] Multiple novel prostate cancer predisposition loci confirmed by an international study: the PRACTICAL Consortium.
[PMID 19318432] Generalizability of associations from prostate cancer genome-wide association studies in multiple populations.
[PMID 19336566] Replication of the 10q11 and Xp11 prostate cancer risk variants: results from a Utah pedigree-based study.
[PMID 20690139] Meta-analysis of genome-wide and replication association studies on prostate cancer.
[PMID 21071540] Validation of genome-wide prostate cancer associations in men of African descent.
[PMID 21390317] Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers--results from BPC3.
[PMID 23159463] Genetic sequence variants are associated with severity of lower urinary tract symptoms and prostate cancer susceptibility.