rs6449213
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 2 | ~4x higher risk for hyperuracemia |
(C;T) | ~2x higher risk for hyperuracemia | |
(T;T) | 0 | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 4 |
Position | 9992591 |
Gene | LOC105374476, SLC2A9 |
is a | snp |
is | mentioned by |
dbSNP | rs6449213 |
dbSNP (classic) | rs6449213 |
ClinGen | rs6449213 |
ebi | rs6449213 |
HLI | rs6449213 |
Exac | rs6449213 |
Gnomad | rs6449213 |
Varsome | rs6449213 |
LitVar | rs6449213 |
Map | rs6449213 |
PheGenI | rs6449213 |
Biobank | rs6449213 |
1000 genomes | rs6449213 |
hgdp | rs6449213 |
ensembl | rs6449213 |
geneview | rs6449213 |
scholar | rs6449213 |
rs6449213 | |
pharmgkb | rs6449213 |
gwascentral | rs6449213 |
openSNP | rs6449213 |
23andMe | rs6449213 |
SNPshot | rs6449213 |
SNPdbe | rs6449213 |
MSV3d | rs6449213 |
GWAS Ctlg | rs6449213 |
GMAF | 0.1299 |
Max Magnitude | 2 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
This is basically a surrogate for rs7442295, and thus associated with higher serum urate levels.
OMIM | 606142 |
Desc | SOLUTE CARRIER FAMILY 2 (FACILITATED GLUCOSE TRANSPORTER), MEMBER |
Variant | |
Related | also |
[PMID 20589538] Variation in the Uric Acid Transporter Gene SLC2A9 and Its Association with AAO of Parkinson's Disease
[PMID 18179892] Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.
[PMID 18398472] Association of common polymorphisms in GLUT9 gene with gout but not with coronary artery disease in a large case-control study.
[PMID 18487473] Sex-specific association of the putative fructose transporter SLC2A9 variants with uric acid levels is modified by BMI.
[PMID 18606621] SLC2A9--a fructose transporter identified as a novel uric acid transporter.
[PMID 18834626] Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.
[PMID 19260141] Genome-wide association study of biochemical traits in Korcula Island, Croatia.
[PMID 20053405] Sex and age interaction with genetic association of atherogenic uric acid concentrations.
[PMID 20162742] Predictive value of 8 genetic loci for serum uric acid concentration.
[PMID 20162743] Common variants in SLC17A3 gene affect intra-personal variation in serum uric acid levels in longitudinal time series.
[PMID 20162744] Interactions between genetic variants in glucose transporter type 9 (SLC2A9) and dietary habits in serum uric acid regulation.
[PMID 20162745] Association of nephrolithiasis and gene for glucose transporter type 9 (SLC2A9): study of 145 patients.
[PMID 20348110] Bayesian methods for instrumental variable analysis with genetic instruments ('Mendelian randomization'): example with urate transporter SLC2A9 as an instrumental variable for effect of urate levels on metabolic syndrome.
[PMID 21294900] A genome-wide association study of serum uric acid in African Americans.
GWAS snp | |
---|---|
PMID | [PMID 23703922] |
Trait | Uric acid levels |
Title | A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls. |
Risk Allele | |
P-val | 3E-12 |
Odds Ratio | NR NR |
[PMID 26552468] Genetic analysis of ABCG2 and SLC2A9 gene polymorphisms in gouty arthritis in a Korean population
ClinVar | |
---|---|
Risk | Rs6449213(T;T) |
Alt | Rs6449213(T;T) |
Reference | Rs6449213(C;C) |
Significance | Other |
Disease | Uric acid concentration |
Variation | info |
Gene | SLC2A9 |
CLNDBN | Uric acid concentration, serum, quantitative trait locus 2 |
Reversed | 0 |
HGVS | NC_000004.11:g.9994215C>T |
CLNSRC | OMIM Allelic Variant |
CLNACC | RCV000004857.2, |
- Is a snp
- In dbSNP
- SNPs on chromosome 4
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Affy500k
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d