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rs7652331

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 normal risk
(C;T) 0 normal risk
(T;T) 0 somewhat higher risk for prostate cancer
ReferenceGRCh38 38.1/141
Chromosome3
Position45921260
GeneFYCO1
is asnp
is mentioned by
dbSNPrs7652331
dbSNP (classic)rs7652331
ClinGenrs7652331
ebirs7652331
HLIrs7652331
Exacrs7652331
Gnomadrs7652331
Varsomers7652331
LitVarrs7652331
Maprs7652331
PheGenIrs7652331
Biobankrs7652331
1000 genomesrs7652331
hgdprs7652331
ensemblrs7652331
geneviewrs7652331
scholarrs7652331
googlers7652331
pharmgkbrs7652331
gwascentralrs7652331
openSNPrs7652331
23andMers7652331
SNPshotrs7652331
SNPdbers7652331
MSV3drs7652331
GWAS Ctlgrs7652331
GMAF0.1511
Max Magnitude0
? (C;C) (C;T) (T;T) 28


rs7652331 is one of seven SNPs found in a combined study of over 1,000 patients to be associated with increased risk for prostate cancer. The risk allele for this SNP is (T); and while the odds ratio was not specifically reported, the probability of false significance (not permuted though) was given as p=4.4 x 10e-5, using a dominant model of risk.[PMID 18073375]


ClinVar
Risk Rs7652331(C;C)
Alt Rs7652331(C;C)
Reference Rs7652331(T;T)
Significance Non-pathogenic
Disease Congenital cataract
Variation info
Gene FYCO1
CLNDBN Congenital cataract
Reversed 0
HGVS NC_000003.11:g.45962752T>C
CLNSRC
CLNACC RCV000355664.1,