rs7652331
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | normal risk |
(C;T) | 0 | normal risk |
(T;T) | 0 | somewhat higher risk for prostate cancer |
Reference | GRCh38 38.1/141 |
Chromosome | 3 |
Position | 45921260 |
Gene | FYCO1 |
is a | snp |
is | mentioned by |
dbSNP | rs7652331 |
dbSNP (classic) | rs7652331 |
ClinGen | rs7652331 |
ebi | rs7652331 |
HLI | rs7652331 |
Exac | rs7652331 |
Gnomad | rs7652331 |
Varsome | rs7652331 |
LitVar | rs7652331 |
Map | rs7652331 |
PheGenI | rs7652331 |
Biobank | rs7652331 |
1000 genomes | rs7652331 |
hgdp | rs7652331 |
ensembl | rs7652331 |
geneview | rs7652331 |
scholar | rs7652331 |
rs7652331 | |
pharmgkb | rs7652331 |
gwascentral | rs7652331 |
openSNP | rs7652331 |
23andMe | rs7652331 |
SNPshot | rs7652331 |
SNPdbe | rs7652331 |
MSV3d | rs7652331 |
GWAS Ctlg | rs7652331 |
GMAF | 0.1511 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
rs7652331 is one of seven SNPs found in a combined study of over 1,000 patients to be associated with increased risk for prostate cancer. The risk allele for this SNP is (T); and while the odds ratio was not specifically reported, the probability of false significance (not permuted though) was given as p=4.4 x 10e-5, using a dominant model of risk.[PMID 18073375]
ClinVar | |
---|---|
Risk | Rs7652331(C;C) |
Alt | Rs7652331(C;C) |
Reference | Rs7652331(T;T) |
Significance | Non-pathogenic |
Disease | Congenital cataract |
Variation | info |
Gene | FYCO1 |
CLNDBN | Congenital cataract |
Reversed | 0 |
HGVS | NC_000003.11:g.45962752T>C |
CLNSRC | |
CLNACC | RCV000355664.1, |