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rs7679

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(T;T) 0 common on affy axiom data
Make rs7679(C;C)
Make rs7679(C;T)
ReferenceGRCh38 38.1/141
Chromosome20
Position45947863
GenePCIF1
is asnp
is mentioned by
dbSNPrs7679
dbSNP (classic)rs7679
ClinGenrs7679
ebirs7679
HLIrs7679
Exacrs7679
Gnomadrs7679
Varsomers7679
LitVarrs7679
Maprs7679
PheGenIrs7679
Biobankrs7679
1000 genomesrs7679
hgdprs7679
ensemblrs7679
geneviewrs7679
scholarrs7679
googlers7679
pharmgkbrs7679
gwascentralrs7679
openSNPrs7679
23andMers7679
23andMe allrs7679
SNPshotrs7679
SNPdbers7679
MSV3drs7679
GWAS Ctlgrs7679
GMAF0.1006
Max Magnitude0
? (C;C) (C;T) (T;T) 28


per the 23andMe blog, the minor allele of this SNP (C) was associated with decreased HDL cholesterol and increased triglycerides

SNP Rarer allele LDL HDL TG
rs6544713 T +
rs2650000 A +
rs471364 C -
rs1800961 T -
rs7679 C - +
rs2967605 T -
rs2409722 T -
rs10903129 A - - -
rs6756629 A - + -
rs12670798 C + + +
rs7395662 A - + +
rs174570 T - - +
rs2271293 A - + -
rs2624265 C +
rs2167079 T +
rs9891572 T +
rs4844614 T +
rs5031002 G +
GWAS snp
PMID [PMID 19060906OA-icon.png]
Trait HDL cholesterol
Title Common variants at 30 loci contribute to polygenic dyslipidemia
Risk Allele C
P-val 4E-9
Odds Ratio 0.07 [0.03-0.11] SD decrease




[PMID 19951432OA-icon.png] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.


[PMID 20160193OA-icon.png] Investigation of variants identified in caucasian genome-wide association studies for plasma high-density lipoprotein cholesterol and triglycerides levels in Mexican dyslipidemic study samples.


[PMID 20385826OA-icon.png] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).


[PMID 21347282OA-icon.png] Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.