rs7679
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(T;T) | 0 | common on affy axiom data |
Make rs7679(C;C) |
Make rs7679(C;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 20 |
Position | 45947863 |
Gene | PCIF1 |
is a | snp |
is | mentioned by |
dbSNP | rs7679 |
dbSNP (classic) | rs7679 |
ClinGen | rs7679 |
ebi | rs7679 |
HLI | rs7679 |
Exac | rs7679 |
Gnomad | rs7679 |
Varsome | rs7679 |
LitVar | rs7679 |
Map | rs7679 |
PheGenI | rs7679 |
Biobank | rs7679 |
1000 genomes | rs7679 |
hgdp | rs7679 |
ensembl | rs7679 |
geneview | rs7679 |
scholar | rs7679 |
rs7679 | |
pharmgkb | rs7679 |
gwascentral | rs7679 |
openSNP | rs7679 |
23andMe | rs7679 |
23andMe all | rs7679 |
SNPshot | rs7679 |
SNPdbe | rs7679 |
MSV3d | rs7679 |
GWAS Ctlg | rs7679 |
GMAF | 0.1006 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
per the 23andMe blog, the minor allele of this SNP (C) was associated with decreased HDL cholesterol and increased triglycerides
SNP | Rarer allele | LDL | HDL | TG |
---|---|---|---|---|
rs6544713 | T | + | ||
rs2650000 | A | + | ||
rs471364 | C | - | ||
rs1800961 | T | - | ||
rs7679 | C | - | + | |
rs2967605 | T | - | ||
rs2409722 | T | - | ||
rs10903129 | A | - | - | - |
rs6756629 | A | - | + | - |
rs12670798 | C | + | + | + |
rs7395662 | A | - | + | + |
rs174570 | T | - | - | + |
rs2271293 | A | - | + | - |
rs2624265 | C | + | ||
rs2167079 | T | + | ||
rs9891572 | T | + | ||
rs4844614 | T | + | ||
rs5031002 | G | + |
GWAS snp | |
---|---|
PMID | [PMID 19060906![]() |
Trait | HDL cholesterol |
Title | Common variants at 30 loci contribute to polygenic dyslipidemia |
Risk Allele | C |
P-val | 4E-9 |
Odds Ratio | 0.07 [0.03-0.11] SD decrease |
[PMID 19951432] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.
[PMID 20160193] Investigation of variants identified in caucasian genome-wide association studies for plasma high-density lipoprotein cholesterol and triglycerides levels in Mexican dyslipidemic study samples.
[PMID 20385826] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).
[PMID 21347282] Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.