rs80357842
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(-;AGTG) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(-;TGAG) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(AGTG;AGTG) | 0 | common/normal |
(TGAG;TGAG) | 0 | common in clinvar |
Make rs80357842(-;-) |
Reference | GRCh38 38.1/142 |
Chromosome | 17 |
Position | 43091672 |
Gene | BRCA1 |
is a | snp |
is | mentioned by |
dbSNP | rs80357842 |
dbSNP (classic) | rs80357842 |
ClinGen | rs80357842 |
ebi | rs80357842 |
HLI | rs80357842 |
Exac | rs80357842 |
Gnomad | rs80357842 |
Varsome | rs80357842 |
LitVar | rs80357842 |
Map | rs80357842 |
PheGenI | rs80357842 |
Biobank | rs80357842 |
1000 genomes | rs80357842 |
hgdp | rs80357842 |
ensembl | rs80357842 |
geneview | rs80357842 |
scholar | rs80357842 |
rs80357842 | |
pharmgkb | rs80357842 |
gwascentral | rs80357842 |
openSNP | rs80357842 |
23andMe | rs80357842 |
SNPshot | rs80357842 |
SNPdbe | rs80357842 |
MSV3d | rs80357842 |
GWAS Ctlg | rs80357842 |
Merged from | Rs80357889 |
Max Magnitude | 6 |
rs80357842, also known as 3975del4, c.3856_3859delAGTG and p.Ser1286_Glu1287?fs, is a variant in the BRCA1 gene considered pathogenic for breast cancer in ClinVar.
ClinVar | |
---|---|
Risk | Rs80357842(TGAG;TGAG) rs80357842(-;-) |
Alt | Rs80357842(TGAG;TGAG) rs80357842(-;-) |
Reference | Rs80357842(AGTG;AGTG) |
Significance | Pathogenic |
Disease | Breast-ovarian cancer Hereditary breast and ovarian cancer syndrome |
Variation | info |
Gene | BRCA1 |
CLNDBN | Breast-ovarian cancer, familial 1 Hereditary breast and ovarian cancer syndrome |
Reversed | 1 |
HGVS | NC_000017.10:g.41243687_41243690delCTCA |
CLNSRC | Breast Cancer Information Core (BRCA1) |
CLNACC | RCV000031134.8, RCV000048359.6, |