rs879254367
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | common in clinvar |
(C;T) | 5 | Familial Hypercholesterolemia |
Make rs879254367(T;T) |
Reference | GRCh38.p7 38.3/149 |
Chromosome | 19 |
Position | 11089397 |
Gene | LDLR |
is a | snp |
is | mentioned by |
dbSNP | rs879254367 |
dbSNP (classic) | rs879254367 |
ClinGen | rs879254367 |
ebi | rs879254367 |
HLI | rs879254367 |
Exac | rs879254367 |
Gnomad | rs879254367 |
Varsome | rs879254367 |
LitVar | rs879254367 |
Map | rs879254367 |
PheGenI | rs879254367 |
Biobank | rs879254367 |
1000 genomes | rs879254367 |
hgdp | rs879254367 |
ensembl | rs879254367 |
geneview | rs879254367 |
scholar | rs879254367 |
rs879254367 | |
pharmgkb | rs879254367 |
gwascentral | rs879254367 |
openSNP | rs879254367 |
23andMe | rs879254367 |
SNPshot | rs879254367 |
SNPdbe | rs879254367 |
MSV3d | rs879254367 |
GWAS Ctlg | rs879254367 |
Max Magnitude | 5 |
[PMID 27569544] A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease. This SNP maps to a position listed in Table S6 as a non-coding variant that their biocurators felt was convincingly associated with a Mendelian disease.
ClinVar | |
---|---|
Risk | rs879254367(T;T) |
Alt | rs879254367(T;T) |
Reference | Rs879254367(C;C) |
Significance | Probable-Pathogenic |
Disease | Familial hypercholesterolemia |
Variation | info |
Gene | LDLR |
CLNDBN | Familial hypercholesterolemia |
Reversed | 0 |
HGVS | NC_000019.9:g.11200073C>T |
CLNSRC | LDLR @ LOVD |
CLNACC | RCV000237330.1, |