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User:JohnLloydScharf/Neanderthal Similarities

From SNPedia

  • A Draft Sequence of the Neandertal Genome
Science 328, 710 (2010);
Richard E. Green, et al.
http://email.eva.mpg.de/~paabo/pdf1/Green_Draft_Science_2010.pdf

Table 3. Top 20 candidate selective sweep regions.[edit]

Region (hg18) S Width (cM) Gene(s)

chr2:43265008-43601389 -6.04 0.5726cM[edit]

ZFP36L2; THADA
ZFP36L2 43305687 rs7933 A or G AA
THADA 43359763 rs7561670 A or G AG
THADA 43367540 rs11900952 A or G AG
THADA 43391215 rs6714624 A or C AC
THADA 43393629 rs7590268 G or T GT
THADA 43395102 rs6730757 C or T CT
THADA 43407453 rs1465618 C or T CT
THADA 43409010 rs4340576 C or T CT
THADA 43430501 rs6544646 A or G AG
THADA 43431923 rs6544647 C or T CT
THADA 43440955 rs3901678 G or T GT
THADA 43441008 rs6732426 C or T CT
THADA 43443833 rs11693801 C or T CT
THADA 43483997 rs17030752 C or T CT
THADA 43484161 rs7557989 C or T CT
THADA 43485980 rs17406451 A or C AC
THADA 43488647 rs6544656 A or G AG
THADA 43492216 rs13029250 G or T GT
THADA 43539711 rs2046916 C or T CT
THADA 43551393 rs17030870 A or G AG

chr11:95533088-95867597 -4.78 0.5538cM[edit]

JRKL;CCDC82;MAML2

chr10:62343313-62655667 -6.1 0.5167cM[edit]

RHOBTB1

chr21:37580123-37789088 -4.5 0.4977cM[edit]

DYRK1A

chr10:83336607-83714543 -6.13 0.4654cM[edit]

NRG3

chr14:100248177-100417724 -4.84 0.4533cM[edit]

MIR337;MIR665;DLK1;RTL1;MIR431;MIR493;MEG3;MIR770

===chr3:157244328-157597592 -6 0.425cM

KCNAB1

chr11:30601000-30992792 -5.29 0.3951cM[edit]

chr2:176635412-176978762 -5.86 0.3481cM[edit]

HOXD11;HOXD8;EVX2;MTX2;HOXD1;HOXD10;HOXD13;HOXD4;HOXD12;HOXD9;MIR10B;HOXD3

chr11:71572763-71914957 -5.28 0.3402cM[edit]

CLPB;FOLR1;PHOX2A;FOLR2;INPPL1

chr7:41537742-41838097 -6.62 0.3129cM[edit]

INHBA

chr10:60015775-60262822 -4.66 0.3129cM[edit]

INHBA

chr6:45440283-45705503 -4.74 0.3112cM[edit]

RUNX2;SUPT3H

chr1:149553200-149878507 -5.69 0.3047cM[edit]

SELENBP1;POGZ;MIR554;RFX5;SNX27;CGN;TUFT1;PI4KB; PSMB4

chr7:121763417-122282663 -6.35 0.2855cM[edit]

RNF148;RNF133;CADPS2

chr7:93597127-93823574 -5.49 0.2769cM[edit]

intergenic 93625349 rs7357193 A or C AC
ntergenic 93783391 rs10953111 A or C AC
intergenic 93797854 rs17166182 A or C AC
intergenic 93801232 rs2157811 C or T CT

chr16:62369107-62675247 -5.18 0.2728cM[edit]

intergenic 62372315 rs258160 C or T CT
intergenic 62381179 rs35574 C or T CT
ntergenic 62382841 rs1346558 A or G AG
intergenic 62409753 rs8061313 G or T GT
intergenic 62413875 rs322575 A or C AC
intergenic 62420883 rs322572 A or C AC
intergenic 62420979 rs322571 C or T CT
intergenic 62427536 rs322613 C or T CT
intergenic 62443241 rs4949082 A or G AG
intergenic 62444504 rs7203039 C or T CT
intergenic 62445373 rs12935776 C or T CT
intergenic 62460554 rs322594 C or T CT
intergenic 62470174 rs322580 C or T CT
intergenic 62480994 rs2199355 C or T CT
intergenic 62481692 rs12920423 C or T CT
intergenic 62486605 rs322567 C or T CT
intergenic 62493387 rs4608360 A or G AG
intergenic 62502501 rs1366516 C or T CT
intergenic 62506452 rs538843 C or T CT
intergenic 62520057 rs2169310 A or G AG
intergenic 62525947 rs12929289 A or G AG
intergenic 62526214 rs12932975 C or T CT
intergenic 62529198 rs10500479 A or G AG
intergenic 62536205 rs1436419 C or T CT
intergenic 62538772 rs9940235 A or C AC
intergenic 62540436 rs12926674 G or T GT
intergenic 62544722 rs1898228 A or G AG
intergenic 62546057 rs11863783 G or T GT
intergenic 62678930 rs17475408 C or T CT

chr14:48931401-49095338 -4.53 0.2582cM[edit]

chr6:90762790-90903925 -4.43 0.2502cM[edit]

BACH2

chr10:9650088-9786954 -4.56 0.2475cM[edit]