rs3125734
From SNPedia
Orientation | plus |
Stabilized | plus |
Make rs3125734(C;C) |
Make rs3125734(C;T) |
Make rs3125734(T;T) |
Reference | GRCh38 38.1/142 |
Chromosome | 10 |
Position | 62198353 |
Gene | RTKN2 |
is a | snp |
is | mentioned by |
dbSNP | rs3125734 |
dbSNP (classic) | rs3125734 |
ClinGen | rs3125734 |
ebi | rs3125734 |
HLI | rs3125734 |
Exac | rs3125734 |
Gnomad | rs3125734 |
Varsome | rs3125734 |
LitVar | rs3125734 |
Map | rs3125734 |
PheGenI | rs3125734 |
Biobank | rs3125734 |
1000 genomes | rs3125734 |
hgdp | rs3125734 |
ensembl | rs3125734 |
geneview | rs3125734 |
scholar | rs3125734 |
rs3125734 | |
pharmgkb | rs3125734 |
gwascentral | rs3125734 |
openSNP | rs3125734 |
23andMe | rs3125734 |
SNPshot | rs3125734 |
SNPdbe | rs3125734 |
MSV3d | rs3125734 |
GWAS Ctlg | rs3125734 |
GMAF | 0.3508 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
GWAS snp | |
---|---|
PMID | [PMID 23028356] |
Trait | Rheumatoid arthritis |
Title | Functional variants in NFKBIE and RTKN2 involved in activation of the NF-κB pathway are associated with rheumatoid arthritis in Japanese. |
Risk Allele | T |
P-val | 5E-9 |
Odds Ratio | 1.20 [1.13-1.27] |
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 10
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d