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rs12599402

From SNPedia

Orientationplus
Stabilizedplus
Make rs12599402(C;C)
Make rs12599402(C;T)
Make rs12599402(T;T)
ReferenceGRCh38 38.1/141
Chromosome16
Position11096031
GeneCLEC16A
is asnp
is mentioned by
dbSNPrs12599402
ebirs12599402
HLIrs12599402
Exacrs12599402
Varsomers12599402
Maprs12599402
PheGenIrs12599402
hapmaprs12599402
1000 genomesrs12599402
hgdprs12599402
ensemblrs12599402
gopubmedrs12599402
geneviewrs12599402
scholarrs12599402
googlers12599402
pharmgkbrs12599402
gwascentralrs12599402
openSNPrs12599402
23andMers12599402
23andMe allrs12599402
SNP Nexus

SNPshotrs12599402
SNPdbers12599402
MSV3drs12599402
GWAS Ctlgrs12599402
GMAF0.477
Max Magnitude
? (C;C) (C;T) (T;T) 28
rs12599402 is a SNP in the ch 16p13 region.

A study totaling over 2,500 Han Chinese patients with systemic lupus erythematosus (SLE) concluded that rs12599402 was significantly associated with risk (p < 5 x 10e-8). The authors suspect that this SNP is tagging the same functional variant as previously reported in European populations.[PMID 20805369]

GWAS snp
PMID [PMID 23273568OA-icon.png]
Trait Systemic lupus erythematosus
Title Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Risk Allele A
P-val 5E-7
Odds Ratio 1.28