rs1574192
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs1574192(C;C) |
| Make rs1574192(C;T) |
| Make rs1574192(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 2 |
| Position | 240369088 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1574192 |
| dbSNP (classic) | rs1574192 |
| ClinGen | rs1574192 |
| ebi | rs1574192 |
| HLI | rs1574192 |
| Exac | rs1574192 |
| Gnomad | rs1574192 |
| Varsome | rs1574192 |
| LitVar | rs1574192 |
| Map | rs1574192 |
| PheGenI | rs1574192 |
| Biobank | rs1574192 |
| 1000 genomes | rs1574192 |
| hgdp | rs1574192 |
| ensembl | rs1574192 |
| geneview | rs1574192 |
| scholar | rs1574192 |
| rs1574192 | |
| pharmgkb | rs1574192 |
| gwascentral | rs1574192 |
| openSNP | rs1574192 |
| 23andMe | rs1574192 |
| SNPshot | rs1574192 |
| SNPdbe | rs1574192 |
| MSV3d | rs1574192 |
| GWAS Ctlg | rs1574192 |
| GMAF | 0.2062 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 19023125 ]
|
| Trait | Brain imaging in schizophrenia (interaction) |
| Title | A Genome-Wide Association Study of Schizophrenia Using Brain Activation as a Quantitative Phenotype |
| Risk Allele | |
| P-val | 0.000004 |
| Odds Ratio | NR NR |
[PMID 19023125] less than 10^-6 p-value interaction with quantitative trait (mean oxygen level-dependent signal in the DLPFC while performing a working memory task [SIRP]) measured (among 64 subjects with schizophrenia and 74 matched controls) - GPC1 and ROBO2-ROBO1 involved in dorsal forebrain development inc. neural precursor migration, axonal connectivity, midline crossing, and axonal guidance
in close proximity to GPC1
