rs1800454
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1.5 | affected |
(A;G) | 1.3 | carrier |
(G;G) | 0 | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 6 |
Position | 32832635 |
Gene | TAP2 |
is a | snp |
is | mentioned by |
dbSNP | rs1800454 |
dbSNP (classic) | rs1800454 |
ClinGen | rs1800454 |
ebi | rs1800454 |
HLI | rs1800454 |
Exac | rs1800454 |
Gnomad | rs1800454 |
Varsome | rs1800454 |
LitVar | rs1800454 |
Map | rs1800454 |
PheGenI | rs1800454 |
Biobank | rs1800454 |
1000 genomes | rs1800454 |
hgdp | rs1800454 |
ensembl | rs1800454 |
geneview | rs1800454 |
scholar | rs1800454 |
rs1800454 | |
pharmgkb | rs1800454 |
gwascentral | rs1800454 |
openSNP | rs1800454 |
23andMe | rs1800454 |
SNPshot | rs1800454 |
SNPdbe | rs1800454 |
MSV3d | rs1800454 |
GWAS Ctlg | rs1800454 |
Merged from | Rs104893997 |
GMAF | 0.1538 |
Max Magnitude | 1.5 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
ClinVar | |
---|---|
Risk | Rs1800454(A;A) |
Alt | Rs1800454(A;A) |
Reference | Rs1800454(G;G) |
Significance | Non-pathogenic |
Disease | PEPTIDE TRANSPORTER PSF2 POLYMORPHISM not specified |
Variation | info |
Gene | TAP2 |
CLNDBN | PEPTIDE TRANSPORTER PSF2 POLYMORPHISM not specified |
Reversed | 1 |
HGVS | NC_000006.11:g.32800412C>T |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000014727.2, RCV000455533.1, |
[PMID 19387463] Variation in the ATP-binding cassette transporter 2 gene is a separate risk factor for systemic lupus erythematosus within the MHC.
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 6
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Affy500k
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d