rs1883025
| Orientation | minus |
| Stabilized | minus |
| Make rs1883025(A;A) |
| Make rs1883025(A;G) |
| Make rs1883025(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 104902020 |
| Gene | ABCA1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1883025 |
| dbSNP (classic) | rs1883025 |
| ClinGen | rs1883025 |
| ebi | rs1883025 |
| HLI | rs1883025 |
| Exac | rs1883025 |
| Gnomad | rs1883025 |
| Varsome | rs1883025 |
| LitVar | rs1883025 |
| Map | rs1883025 |
| PheGenI | rs1883025 |
| Biobank | rs1883025 |
| 1000 genomes | rs1883025 |
| hgdp | rs1883025 |
| ensembl | rs1883025 |
| geneview | rs1883025 |
| scholar | rs1883025 |
| rs1883025 | |
| pharmgkb | rs1883025 |
| gwascentral | rs1883025 |
| openSNP | rs1883025 |
| 23andMe | rs1883025 |
| SNPshot | rs1883025 |
| SNPdbe | rs1883025 |
| MSV3d | rs1883025 |
| GWAS Ctlg | rs1883025 |
| GMAF | 0.2815 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 19060906 ]
|
| Trait | HDL cholesterol |
| Title | Common variants at 30 loci contribute to polygenic dyslipidemia |
| Risk Allele | T |
| P-val | 1E-9 |
| Odds Ratio | 0.08 [0.04-0.12] SD decrease |
[PMID 21738485] Genetic determinants of lipid traits in diverse populations from the population architecture using genomics and epidemiology (PAGE) study
| GWAS snp | |
|---|---|
| PMID | [PMID 20686565]
|
| Trait | |
| Title | Biological, clinical and population relevance of 95 loci for blood lipids. |
| Risk Allele | T |
| P-val | 2E-33 |
| Odds Ratio | 0.9400 None |
[PMID 22247473] Prospective assessment of genetic effects on progression to different stages of age-related macular degeneration using multistate Markov models
| GWAS snp | |
|---|---|
| PMID | [PMID 22399527]
|
| Trait | |
| Title | Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. |
| Risk Allele | T |
| P-val | 6E-10 |
| Odds Ratio | 0.1000 None |
[PMID 17430597] Apolipoprotein E levels in cerebrospinal fluid and the effects of ABCA1 polymorphisms.
[PMID 19951432] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.
[PMID 20160193] Investigation of variants identified in caucasian genome-wide association studies for plasma high-density lipoprotein cholesterol and triglycerides levels in Mexican dyslipidemic study samples.
[PMID 20339536] Genome-wide association of lipid-lowering response to statins in combined study populations.
[PMID 20385819] Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.
[PMID 20385826] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).
[PMID 24223199] Association of HDL-Related Loci with Age-Related Macular Degeneration and Plasma Lutein and Zeaxanthin: the Alienor Study
[PMID 24970616] The contribution of genetic factors to phenotype and progression of drusen in early age-related macular degeneration
| GWAS snp | |
|---|---|
| PMID | [PMID 24097068]
|
| Trait | Cholesterol, total |
| Title | Discovery and refinement of loci associated with lipid levels. |
| Risk Allele | T |
| P-val | 6E-53 |
| Odds Ratio | .07 [NR] unit decrease |
[PMID 29259020] Genetic risk factors for late age-related macular degeneration in India.
