rs2088885
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs2088885(A;A) |
| Make rs2088885(A;C) |
| Make rs2088885(C;C) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 3 |
| Position | 171253502 |
| Gene | TNIK |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2088885 |
| dbSNP (classic) | rs2088885 |
| ClinGen | rs2088885 |
| ebi | rs2088885 |
| HLI | rs2088885 |
| Exac | rs2088885 |
| Gnomad | rs2088885 |
| Varsome | rs2088885 |
| LitVar | rs2088885 |
| Map | rs2088885 |
| PheGenI | rs2088885 |
| Biobank | rs2088885 |
| 1000 genomes | rs2088885 |
| hgdp | rs2088885 |
| ensembl | rs2088885 |
| geneview | rs2088885 |
| scholar | rs2088885 |
| rs2088885 | |
| pharmgkb | rs2088885 |
| gwascentral | rs2088885 |
| openSNP | rs2088885 |
| 23andMe | rs2088885 |
| SNPshot | rs2088885 |
| SNPdbe | rs2088885 |
| MSV3d | rs2088885 |
| GWAS Ctlg | rs2088885 |
| GMAF | 0.4982 |
| Max Magnitude | 0 |
| ? | (A;A) (A;C) (C;C) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 19023125 ]
|
| Trait | Brain imaging in schizophrenia (interaction) |
| Title | A Genome-Wide Association Study of Schizophrenia Using Brain Activation as a Quantitative Phenotype |
| Risk Allele | |
| P-val | 0.000006 |
| Odds Ratio | NR NR |
[PMID 19023125] less than 10^-6 p-value interaction with quantitative trait (mean oxygen level-dependent signal in the DLPFC while performing a working memory task [SIRP]) measured (among 64 subjects with schizophrenia and 74 matched controls) - TNIK related to HPA function and enviromental stress response, in the adult it mediates stress related responses and affects LTP in concert with RAPT2
