rs2293889
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common in clinvar |
| Make rs2293889(G;G) |
| Make rs2293889(G;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 8 |
| Position | 115586972 |
| Gene | TRPS1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2293889 |
| dbSNP (classic) | rs2293889 |
| ClinGen | rs2293889 |
| ebi | rs2293889 |
| HLI | rs2293889 |
| Exac | rs2293889 |
| Gnomad | rs2293889 |
| Varsome | rs2293889 |
| LitVar | rs2293889 |
| Map | rs2293889 |
| PheGenI | rs2293889 |
| Biobank | rs2293889 |
| 1000 genomes | rs2293889 |
| hgdp | rs2293889 |
| ensembl | rs2293889 |
| geneview | rs2293889 |
| scholar | rs2293889 |
| rs2293889 | |
| pharmgkb | rs2293889 |
| gwascentral | rs2293889 |
| openSNP | rs2293889 |
| 23andMe | rs2293889 |
| SNPshot | rs2293889 |
| SNPdbe | rs2293889 |
| MSV3d | rs2293889 |
| GWAS Ctlg | rs2293889 |
| GMAF | 0.2525 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 20686565 ]
|
| Trait | |
| Title | Biological, clinical and population relevance of 95 loci for blood lipids. |
| Risk Allele | T |
| P-val | 6E-11 |
| Odds Ratio | 0.4400 None |
| GWAS snp | |
|---|---|
| PMID | [PMID 24097068]
|
| Trait | HDL cholesterol |
| Title | Discovery and refinement of loci associated with lipid levels. |
| Risk Allele | T |
| P-val | 4E-17 |
| Odds Ratio | .03 [NR] unit decrease |
| ClinVar | |
|---|---|
| Risk | rs2293889(C;C) rs2293889(G;G) |
| Alt | rs2293889(C;C) rs2293889(G;G) |
| Reference | Rs2293889(T;T) |
| Significance | Non-pathogenic |
| Disease | not specified |
| Variation | info |
| Gene | TRPS1 |
| CLNDBN | not specified |
| Reversed | 0 |
| HGVS | NC_000008.10:g.116599199T>G |
| CLNSRC | |
| CLNACC | RCV000249619.1, |
[PMID 30003933] Lipid-associated genetic polymorphisms are associated with FBP and LDL-c levels among myocardial infarction patients in Chinese population.
