rs2836878

Orientation

plus

Stabilized

plus

Make rs2836878(A;A)

Make rs2836878(A;G)

Make rs2836878(G;G)

Reference

GRCh38 38.1/141

Chromosome

21

Position

39093608

is a	snp
is	mentioned by
dbSNP	rs2836878
dbSNP (classic)	rs2836878
ClinGen	rs2836878
ebi	rs2836878
HLI	rs2836878
Exac	rs2836878
Gnomad	rs2836878
Varsome	rs2836878
LitVar	rs2836878
Map	rs2836878
PheGenI	rs2836878
Biobank	rs2836878
1000 genomes	rs2836878
hgdp	rs2836878
ensembl	rs2836878
geneview	rs2836878
scholar	rs2836878
google	rs2836878
pharmgkb	rs2836878
gwascentral	rs2836878
openSNP	rs2836878
23andMe	rs2836878
SNPshot	rs2836878
SNPdbe	rs2836878
MSV3d	rs2836878
GWAS Ctlg	rs2836878

GMAF

0.2185

Max Magnitude

0

?

(A;A) (A;G) (G;G)

28

GWAS
SNP	rs2836878
PubMedID	[PMID 18758464 ]
Condition	Inflammatory bowel disease
Gene	PSMG1
Risk Allele
pValue	4.00E-012
OR	1.41
95% CI	1.08-1.84

OMIM	612567
Desc	INFLAMMATORY BOWEL DISEASE 25; IBD25
Variant
Related	also

GWAS snp
PMID	[PMID 21300955 ]
Trait
Title	Meta-Analysis of Genome-Wide Association Studies in >80 000 Subjects Identifies Multiple Loci for C-Reactive Protein Levels
Risk Allele	G
P-val	2E-7
Odds Ratio	0.0320 [0.02-0.04] unit increase

GWAS snp
PMID	[PMID 21297633 ]
Trait
Title	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
Risk Allele	G
P-val	2E-22
Odds Ratio	1.2500 [1.20-1.32]

[PMID 19623168] Investigation of reported associations between the 20q13 and 21q22 loci and pediatric-onset Crohn's disease in Canadian children.

[PMID 21304977 ] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.

GWAS snp
PMID	[PMID 23128233 ]
Trait	Inflammatory bowel disease
Title	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Risk Allele	G
P-val	5E-48
Odds Ratio	1.18 [1.142-1.219]