rs662702
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | common in clinvar |
Make rs662702(C;T) |
Make rs662702(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 11 |
Position | 31787522 |
Gene | PAX6 |
is a | snp |
is | mentioned by |
dbSNP | rs662702 |
dbSNP (classic) | rs662702 |
ClinGen | rs662702 |
ebi | rs662702 |
HLI | rs662702 |
Exac | rs662702 |
Gnomad | rs662702 |
Varsome | rs662702 |
LitVar | rs662702 |
Map | rs662702 |
PheGenI | rs662702 |
Biobank | rs662702 |
1000 genomes | rs662702 |
hgdp | rs662702 |
ensembl | rs662702 |
geneview | rs662702 |
scholar | rs662702 |
rs662702 | |
pharmgkb | rs662702 |
gwascentral | rs662702 |
openSNP | rs662702 |
23andMe | rs662702 |
SNPshot | rs662702 |
SNPdbe | rs662702 |
MSV3d | rs662702 |
GWAS Ctlg | rs662702 |
GMAF | 0.1511 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
[PMID 21421876] A functional polymorphism at 3' UTR of the PAX6 gene may confer risk for extreme myopia in Chinese
[PMID 22447870] MicroRNA-328 may influence myopia development by mediating the PAX6 gene
[PMID 15307048] A susceptibility locus for myopia in the normal population is linked to the PAX6 gene region on chromosome 11: a genomewide scan of dizygotic twins.
[PMID 20360993] Candidate gene study to investigate the genetic determinants of normal variation in central corneal thickness.
[PMID 27386500] A microRNA-328 binding site in PAX6 is associated with centrotemporal spikes of rolandic epilepsy.
ClinVar | |
---|---|
Risk | rs662702(T;T) |
Alt | rs662702(T;T) |
Reference | Rs662702(C;C) |
Significance | Non-pathogenic |
Disease | Foveal hypoplasia and presenile cataract syndrome Wilms tumor Anophthalmia Keratitis Aniridia Peters anomaly |
Variation | info |
Gene | PAX6 |
CLNDBN | Foveal hypoplasia and presenile cataract syndrome Wilms tumor, aniridia, genitourinary anomalies, and mental retardation syndrome Anophthalmia Keratitis, hereditary Aniridia Aniridia, Cerebellar Ataxia, And Intellectual Disability Peters anomaly |
Reversed | 0 |
HGVS | NC_000011.9:g.31809070C>T |
CLNSRC | |
CLNACC | RCV000262036.1, RCV000295981.1, RCV000317253.1, RCV000320954.1, RCV000332508.1, RCV000357038.1, RCV000371951.1, |
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 11
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d