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rs12210050

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 common on affy axiom data
(C;T) 1.5 Slightly higher risk for basal cell carcinoma
(T;T) 1.5 Slighly higher risk for basal cell carcinoma
ReferenceGRCh37 37.1/131
Chromosome6
Position475489
is asnp
is mentioned by
dbSNPrs12210050
ebirs12210050
HLIrs12210050
Exacrs12210050
Varsomers12210050
Maprs12210050
PheGenIrs12210050
hapmaprs12210050
1000 genomesrs12210050
hgdprs12210050
ensemblrs12210050
gopubmedrs12210050
geneviewrs12210050
scholarrs12210050
googlers12210050
pharmgkbrs12210050
gwascentralrs12210050
openSNPrs12210050
23andMers12210050
23andMe allrs12210050
SNP Nexus

SNPshotrs12210050
SNPdbers12210050
MSV3drs12210050
GWAS Ctlgrs12210050
GMAF0.06015
Max Magnitude1.5

[PMID 24270849OA-icon.png] rs12210050 was found to be associated with basal cell carcinoma based on a study by the eMERGE network in which electronic medical records were searched to find clinical associations associated with selected SNPs.

? (C;C) (C;T) (T;T) 28
GWAS snp
PMID [PMID 19340012OA-icon.png]
Trait Tanning
Title Genome-Wide Association Study of Tanning Phenotype in a Population of European Ancestry
Risk Allele T
P-val 5E-14
Odds Ratio


[PMID 21700618OA-icon.png] Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma


GET Evidence
rs12210050
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.0625
summary



GWAS snp
PMID [PMID 22885689]
Trait Schizophrenia
Title Genome-wide association study of multiplex schizophrenia pedigrees.
Risk Allele
P-val 3E-6
Odds Ratio 1.20 [NR]