Have questions? Visit https://www.reddit.com/r/SNPedia

rs1953126

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(C;C) 0 normal
(C;T) 1.3x increased risk for rheumatoid arthritis
(T;T) 1.3x increased risk for rheumatoid arthritis
ReferenceGRCh38 38.1/141
Chromosome9
Position120878222
GenePHF19
is asnp
is mentioned by
dbSNPrs1953126
ebirs1953126
HLIrs1953126
Exacrs1953126
Varsomers1953126
Maprs1953126
PheGenIrs1953126
hapmaprs1953126
1000 genomesrs1953126
hgdprs1953126
ensemblrs1953126
gopubmedrs1953126
geneviewrs1953126
scholarrs1953126
googlers1953126
pharmgkbrs1953126
gwascentralrs1953126
openSNPrs1953126
23andMers1953126
23andMe allrs1953126
SNP Nexus

SNPshotrs1953126
SNPdbers1953126
MSV3drs1953126
GWAS Ctlgrs1953126
GMAF0.3177
Max Magnitude0
? (C;C) (C;T) (T;T) 28
A study of 475 Caucasian patients concluded that rs1953126, on chromosome 9q33.2, was significantly associated with rheumatoid arthritis (odds ratio 1.28, CI 1.16–1.40, trend p comb = 1.45e-06).[PMID 18648537OA-icon.png]


[PMID 19714643] TRAF1 polymorphisms associated with rheumatoid arthritis susceptibility in Asians and in Caucasians

GWAS snp
PMID [PMID 21383967OA-icon.png]
Trait
Title Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci
Risk Allele T
P-val 4E-11
Odds Ratio None None


[PMID 20017974OA-icon.png] Simultaneous analysis of all single-nucleotide polymorphisms in genome-wide association study of rheumatoid arthritis.


[PMID 20017985OA-icon.png] Adjusting for HLA-DRbeta1 in a genome-wide association analysis of rheumatoid arthritis and related biomarkers.


[PMID 20018005OA-icon.png] Analysis of genome-wide association data by large-scale Bayesian logistic regression.


[PMID 20018022OA-icon.png] Replication of recently identified associated single-nucleotide polymorphisms from six autoimmune diseases in Genetic Analysis Workshop 16 rheumatoid arthritis data.


[PMID 20018027OA-icon.png] Conditional analysis of the major histocompatibility complex in rheumatoid arthritis.


[PMID 20018028OA-icon.png] Armitage's trend test for genome-wide association analysis: one-sided or two-sided?


[PMID 20018053OA-icon.png] A genome-wide association scan for rheumatoid arthritis data by Hotelling's T2 tests.


[PMID 20018075OA-icon.png] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.


[PMID 20018090OA-icon.png] Comparative analysis of different approaches for dealing with candidate regions in the context of a genome-wide association study.