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rs743777

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A)
(A;G)
(G;G)
ReferenceGRCh38 38.1/141
Chromosome22
Position37155567
is asnp
is mentioned by
dbSNPrs743777
ebirs743777
HLIrs743777
Exacrs743777
Varsomers743777
Maprs743777
PheGenIrs743777
hapmaprs743777
1000 genomesrs743777
hgdprs743777
ensemblrs743777
gopubmedrs743777
geneviewrs743777
scholarrs743777
googlers743777
pharmgkbrs743777
gwascentralrs743777
openSNPrs743777
23andMers743777
23andMe allrs743777
SNP Nexus

SNPshotrs743777
SNPdbers743777
MSV3drs743777
GWAS Ctlgrs743777
GMAF0.2828
Max Magnitude
? (A;A) (A;G) (G;G) 28
rs743777 has been reported in a large study to be associated with rheumatoid arthritis.

The risk allele (oriented to the dbSNP entry) is (G); the odds ratio associated with heterozygotes is 1.09 (CI 0.97-1.24), and for homozygotes, 1.72 (CI 1.40-2.11). [PMID 17554300OA-icon.png]

GWAS
SNP rs743777
PubMedID [PMID 17554300OA-icon.png]
Condition Rheumatoid arthritis
Gene NR
Risk Allele G
pValue 1.00E-006
OR 1.09
95% CI 0.97-1.24



GWAS snp
PMID [PMID 21653640]
Trait
Title Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.
Risk Allele G
P-val 0.000002
Odds Ratio 1.1900 [1.10-1.30]
GWAS snp
PMID [PMID 21829393OA-icon.png]
Trait
Title Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.
Risk Allele G
P-val 0.000002
Odds Ratio 1.1000 [NR]

[PMID 18625055OA-icon.png] Lack of association or interactions between the IL-4, IL-4Ralpha and IL-13 genes, and rheumatoid arthritis.

[PMID 18794857OA-icon.png] Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13.

[PMID 20017963OA-icon.png] Representation of genetic association via attributable familial relative risks in order to identify polymorphisms functionally relevant to rheumatoid arthritis.

[PMID 20426808OA-icon.png] AntEpiSeeker: detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm.

[PMID 20728947] A novel galectin-1 and interleukin 2 receptor beta haplotype is associated with autoimmune myasthenia gravis.


GET Evidence
rs743777
aa_change
aa_change_short
impact pathogenic
qualified_impact Insufficiently evaluated pathogenic
overall_frequency 0.335938
summary



[PMID 22328738OA-icon.png] Comprehensive assessment of rheumatoid arthritis susceptibility loci in a large psoriatic arthritis cohort.