rs17085007

Orientation

plus

Stabilized

plus

Geno	Mag	Summary
(C;C)		>1.35x increased risk for ulcerative colitis
(C;T)		1.35x increased risk for ulcerative colitis
(T;T)		1x normal risk for ulcerative colitis

Reference

GRCh38 38.1/141

Chromosome

13

Position

26957130

is a	snp
is	mentioned by
dbSNP	rs17085007
dbSNP (classic)	rs17085007
ClinGen	rs17085007
ebi	rs17085007
HLI	rs17085007
Exac	rs17085007
Gnomad	rs17085007
Varsome	rs17085007
LitVar	rs17085007
Map	rs17085007
PheGenI	rs17085007
Biobank	rs17085007
1000 genomes	rs17085007
hgdp	rs17085007
ensembl	rs17085007
geneview	rs17085007
scholar	rs17085007
google	rs17085007
pharmgkb	rs17085007
gwascentral	rs17085007
openSNP	rs17085007
23andMe	rs17085007
SNPshot	rs17085007
SNPdbe	rs17085007
MSV3d	rs17085007
GWAS Ctlg	rs17085007

GMAF

0.1639

Max Magnitude

0

?	(C;C) (C;T) (T;T)	28

[PMID 19915573] A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population

OMIM	612796
Desc
Variant
Related	also

GWAS snp
PMID	[PMID 21297633]
Trait
Title	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
Risk Allele	C
P-val	1E-16
Odds Ratio	1.1600 [1.10-1.21]

GWAS snp
PMID	[PMID 23128233]
Trait	Inflammatory bowel disease
Title	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Risk Allele	C
P-val	3E-19
Odds Ratio	1.11 [1.065-1.147]

GWAS snp
PMID	[PMID 23511034]
Trait	Ulcerative colitis
Title	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.
Risk Allele	C
P-val	3E-7
Odds Ratio	1.37 [1.22-1.55]

[PMID 26398853] Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans