rs1736557
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1.1 | normal? |
(A;G) | 0 | unlikely to be associated with trimethylaminuria unless as a carrier (if that) |
(G;G) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 1 |
Position | 171110939 |
Gene | FMO3 |
is a | snp |
is | mentioned by |
dbSNP | rs1736557 |
dbSNP (classic) | rs1736557 |
ClinGen | rs1736557 |
ebi | rs1736557 |
HLI | rs1736557 |
Exac | rs1736557 |
Gnomad | rs1736557 |
Varsome | rs1736557 |
LitVar | rs1736557 |
Map | rs1736557 |
PheGenI | rs1736557 |
Biobank | rs1736557 |
1000 genomes | rs1736557 |
hgdp | rs1736557 |
ensembl | rs1736557 |
geneview | rs1736557 |
scholar | rs1736557 |
rs1736557 | |
pharmgkb | rs1736557 |
gwascentral | rs1736557 |
openSNP | rs1736557 |
23andMe | rs1736557 |
SNPshot | rs1736557 |
SNPdbe | rs1736557 |
MSV3d | rs1736557 |
GWAS Ctlg | rs1736557 |
Merged from | Rs17858963 |
GMAF | 0.09412 |
Max Magnitude | 1.1 |
rs1736557, also known as Val257Met, is a SNP in the FMO3 gene. It has been linked to trimethylaminuria; see variant .0002, OMIM 136132.
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
ClinVar | |
---|---|
Risk | Rs1736557(A;A) |
Alt | Rs1736557(A;A) |
Reference | Rs1736557(G;G) |
Significance | Other |
Disease | Trimethylaminuria not specified |
Variation | info |
Gene | FMO3 |
CLNDBN | Trimethylaminuria not specified |
Reversed | 0 |
HGVS | NC_000001.10:g.171080080G>A |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000017698.29, RCV000253910.1, |
[PMID 15858076] Discovery of novel flavin-containing monooxygenase 3 (FMO3) single nucleotide polymorphisms and functional analysis of upstream haplotype variants.
[PMID 24165757] The association of cytochrome P450 genetic polymorphisms with sulfolane formation and the efficacy of a busulfan-based conditioning regimen in pediatric patients undergoing hematopoietic stem cell transplantation
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 1
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d