rs12599402
From SNPedia
Orientation | plus |
Stabilized | plus |
Make rs12599402(C;C) |
Make rs12599402(C;T) |
Make rs12599402(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 16 |
Position | 11096031 |
Gene | CLEC16A |
is a | snp |
is | mentioned by |
dbSNP | rs12599402 |
dbSNP (classic) | rs12599402 |
ClinGen | rs12599402 |
ebi | rs12599402 |
HLI | rs12599402 |
Exac | rs12599402 |
Gnomad | rs12599402 |
Varsome | rs12599402 |
LitVar | rs12599402 |
Map | rs12599402 |
PheGenI | rs12599402 |
Biobank | rs12599402 |
1000 genomes | rs12599402 |
hgdp | rs12599402 |
ensembl | rs12599402 |
geneview | rs12599402 |
scholar | rs12599402 |
rs12599402 | |
pharmgkb | rs12599402 |
gwascentral | rs12599402 |
openSNP | rs12599402 |
23andMe | rs12599402 |
SNPshot | rs12599402 |
SNPdbe | rs12599402 |
MSV3d | rs12599402 |
GWAS Ctlg | rs12599402 |
GMAF | 0.477 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
rs12599402 is a SNP in the ch 16p13 region.
A study totaling over 2,500 Han Chinese patients with systemic lupus erythematosus (SLE) concluded that rs12599402 was significantly associated with risk (p < 5 x 10e-8). The authors suspect that this SNP is tagging the same functional variant as previously reported in European populations.[PMID 20805369]
GWAS snp | |
---|---|
PMID | [PMID 23273568] |
Trait | Systemic lupus erythematosus |
Title | Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. |
Risk Allele | A |
P-val | 5E-7 |
Odds Ratio | 1.28 |