rs1551398
From SNPedia
Orientation | minus |
Stabilized | minus |
Make rs1551398(C;C) |
Make rs1551398(C;T) |
Make rs1551398(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 8 |
Position | 125527809 |
Gene | LOC105375746 |
is a | snp |
is | mentioned by |
dbSNP | rs1551398 |
dbSNP (classic) | rs1551398 |
ClinGen | rs1551398 |
ebi | rs1551398 |
HLI | rs1551398 |
Exac | rs1551398 |
Gnomad | rs1551398 |
Varsome | rs1551398 |
LitVar | rs1551398 |
Map | rs1551398 |
PheGenI | rs1551398 |
Biobank | rs1551398 |
1000 genomes | rs1551398 |
hgdp | rs1551398 |
ensembl | rs1551398 |
geneview | rs1551398 |
scholar | rs1551398 |
rs1551398 | |
pharmgkb | rs1551398 |
gwascentral | rs1551398 |
openSNP | rs1551398 |
23andMe | rs1551398 |
SNPshot | rs1551398 |
SNPdbe | rs1551398 |
MSV3d | rs1551398 |
GWAS Ctlg | rs1551398 |
GMAF | 0.4311 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
GWAS snp | |
---|---|
PMID | [PMID 18587394] |
Trait | Crohn's disease |
Title | Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease |
Risk Allele | A |
P-val | 5.0000000000000001E-9 |
Odds Ratio | 1.08 [NR] |
DeCode reports that rs1551398 is associated with susceptibility to Crohn's disease. [PMID 18587394]
[PMID 19068216] Investigation of Crohn's disease risk loci in ulcerative colitis further defines their molecular relationship.
[PMID 21304977] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
[PMID 23543094] Testing for associations between loci and environmental gradients using latent factor mixed models.