rs2000999
From SNPedia
Orientation | plus |
Stabilized | plus |
Make rs2000999(A;A) |
Make rs2000999(A;G) |
Make rs2000999(G;G) |
Reference | GRCh38 38.1/141 |
Chromosome | 16 |
Position | 72074194 |
Gene | HPR, TXNL4B |
is a | snp |
is | mentioned by |
dbSNP | rs2000999 |
dbSNP (classic) | rs2000999 |
ClinGen | rs2000999 |
ebi | rs2000999 |
HLI | rs2000999 |
Exac | rs2000999 |
Gnomad | rs2000999 |
Varsome | rs2000999 |
LitVar | rs2000999 |
Map | rs2000999 |
PheGenI | rs2000999 |
Biobank | rs2000999 |
1000 genomes | rs2000999 |
hgdp | rs2000999 |
ensembl | rs2000999 |
geneview | rs2000999 |
scholar | rs2000999 |
rs2000999 | |
pharmgkb | rs2000999 |
gwascentral | rs2000999 |
openSNP | rs2000999 |
23andMe | rs2000999 |
SNPshot | rs2000999 |
SNPdbe | rs2000999 |
MSV3d | rs2000999 |
GWAS Ctlg | rs2000999 |
GMAF | 0.197 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
GWAS snp | |
---|---|
PMID | [PMID 20686565![]() |
Trait | |
Title | Biological, clinical and population relevance of 95 loci for blood lipids. |
Risk Allele | A |
P-val | 2E-22 |
Odds Ratio | 2.0000 None |
GWAS snp | |
---|---|
PMID | [PMID 22403646![]() |
Trait | |
Title | A genome-wide association study identifies rs2000999 as a strong genetic determinant of circulating haptoglobin levels. |
Risk Allele | A |
P-val | 8E-59 |
Odds Ratio | 0.1380 None |
[PMID 22579477] Clinical necessity of partitioning of human plasma haptoglobin reference intervals by recently-discovered rs2000999.
[PMID 20066028] Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels.
[PMID 22433445] Complexity of a complex trait locus: HP, HPR, haemoglobin and cholesterol.
GWAS snp | |
---|---|
PMID | [PMID 24097068![]() |
Trait | Cholesterol, total |
Title | Discovery and refinement of loci associated with lipid levels. |
Risk Allele | A |
P-val | 7E-41 |
Odds Ratio | .06 [NR] unit increase |