rs3099844
Orientation | plus |
Stabilized | plus |
Make rs3099844(A;A) |
Make rs3099844(A;C) |
Make rs3099844(C;C) |
Reference | GRCh38 38.1/141 |
Chromosome | 6 |
Position | 31481199 |
Gene | LOC102725068 |
is a | snp |
is | mentioned by |
dbSNP | rs3099844 |
dbSNP (classic) | rs3099844 |
ClinGen | rs3099844 |
ebi | rs3099844 |
HLI | rs3099844 |
Exac | rs3099844 |
Gnomad | rs3099844 |
Varsome | rs3099844 |
LitVar | rs3099844 |
Map | rs3099844 |
PheGenI | rs3099844 |
Biobank | rs3099844 |
1000 genomes | rs3099844 |
hgdp | rs3099844 |
ensembl | rs3099844 |
geneview | rs3099844 |
scholar | rs3099844 |
rs3099844 | |
pharmgkb | rs3099844 |
gwascentral | rs3099844 |
openSNP | rs3099844 |
23andMe | rs3099844 |
SNPshot | rs3099844 |
SNPdbe | rs3099844 |
MSV3d | rs3099844 |
GWAS Ctlg | rs3099844 |
GMAF | 0.0854 |
Max Magnitude | 0 |
? | (A;A) (A;C) (C;C) | 28 |
---|---|---|
|
[PMID 19944697] Genome-wide association analysis in primary sclerosing cholangitis
[PMID 20662065] Genome-wide association study of cardiac manifestations of neonatal lupus identifies candidate loci at 6p21 and 21q22
GWAS snp | |
---|---|
PMID | [PMID 22399527] |
Trait | |
Title | Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. |
Risk Allele | A |
P-val | 2E-8 |
Odds Ratio | 0.1500 None |
[PMID 18204098] Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
[PMID 18309376] Several regions in the major histocompatibility complex confer risk for anti-CCP-antibody positive rheumatoid arthritis, independent of the DRB1 locus.
[PMID 19197363] A genome-wide investigation of SNPs and CNVs in schizophrenia.
[PMID 19853236] Sequence variants in three loci influence monocyte counts and erythrocyte volume.
[PMID 20017995] A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies.
[PMID 20437058] The utility and predictive value of combinations of low penetrance genes for screening and risk prediction of colorectal cancer.
[PMID 24322967] HCP5 genetic variant (RS3099844) contributes to Nevirapine-induced Stevens Johnsons Syndrome/Toxic Epidermal Necrolysis susceptibility in a population from Mozambique
[PMID 30882006] STAT4, TRAF3IP2, IL10, and HCP5 Polymorphisms in Sjögren's Syndrome: Association with Disease Susceptibility and Clinical Aspects.
- Is a snp
- In dbSNP
- SNPs on chromosome 6
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip 23andMe v5
- On chip Affy GenomeWide 6
- On chip Ancestry v2c
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip Ancestry v2d