rs9653442
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs9653442(C;C) |
| Make rs9653442(C;T) |
| Make rs9653442(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 2 |
| Position | 100208905 |
| Gene | LINC01104 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs9653442 |
| dbSNP (classic) | rs9653442 |
| ClinGen | rs9653442 |
| ebi | rs9653442 |
| HLI | rs9653442 |
| Exac | rs9653442 |
| Gnomad | rs9653442 |
| Varsome | rs9653442 |
| LitVar | rs9653442 |
| Map | rs9653442 |
| PheGenI | rs9653442 |
| Biobank | rs9653442 |
| 1000 genomes | rs9653442 |
| hgdp | rs9653442 |
| ensembl | rs9653442 |
| geneview | rs9653442 |
| scholar | rs9653442 |
| rs9653442 | |
| pharmgkb | rs9653442 |
| gwascentral | rs9653442 |
| openSNP | rs9653442 |
| 23andMe | rs9653442 |
| SNPshot | rs9653442 |
| SNPdbe | rs9653442 |
| MSV3d | rs9653442 |
| GWAS Ctlg | rs9653442 |
| GMAF | 0.4637 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 17554260 ]
|
| Trait | Type 1 diabetes |
| Title | Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes |
| Risk Allele | G |
| P-val | 0.0000050000000000000004 |
| Odds Ratio | 1.11 [1.05-1.17] |
[PMID 19140132] Unbiased estimation of odds ratios: combining genomewide association scans with replication studies.
[PMID 19359276] Identification of AF4/FMR2 family, member 3 (AFF3) as a novel rheumatoid arthritis susceptibility locus and confirmation of two further pan-autoimmune susceptibility genes.
[PMID 19639606] Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.
[PMID 20072139] Association of the AFF3 gene and IL2/IL21 gene region with juvenile idiopathic arthritis.
| GWAS snp | |
|---|---|
| PMID | [PMID 24390342]
|
| Trait | Rheumatoid arthritis |
| Title | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
| Risk Allele | C |
| P-val | 2E-18 |
| Odds Ratio | 1.11 [1.09-1.14] |
[PMID 28681901] Dense Genotyping of Immune-Related Regions Identifies Loci for Rheumatoid Arthritis Risk and Damage in African Americans.
