rs267606858
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | common in clinvar |
(C;T) | 3 | Likely miscall in DNA chip data, such as that from Ancestry or 23andMe; otherwise, carrier of a glycogen storage disease mutation |
(T;T) | 5 | Likely miscall in DNA-chip based data, such as that from Ancestry or 23andMe; otherwise, Glycogen storage disease XV |
Reference | GRCh38 38.1/141 |
Chromosome | 3 |
Position | 148996406 |
Gene | GYG1 |
is a | snp |
is | mentioned by |
dbSNP | rs267606858 |
dbSNP (classic) | rs267606858 |
ClinGen | rs267606858 |
ebi | rs267606858 |
HLI | rs267606858 |
Exac | rs267606858 |
Gnomad | rs267606858 |
Varsome | rs267606858 |
LitVar | rs267606858 |
Map | rs267606858 |
PheGenI | rs267606858 |
Biobank | rs267606858 |
1000 genomes | rs267606858 |
hgdp | rs267606858 |
ensembl | rs267606858 |
geneview | rs267606858 |
scholar | rs267606858 |
rs267606858 | |
pharmgkb | rs267606858 |
gwascentral | rs267606858 |
openSNP | rs267606858 |
23andMe | rs267606858 |
SNPshot | rs267606858 |
SNPdbe | rs267606858 |
MSV3d | rs267606858 |
GWAS Ctlg | rs267606858 |
Max Magnitude | 5 |
rs267606858, also known as c.248C>T, p.Thr83Met and T83M, represents a very rare mutation in the GYG1 gene on chromosome 3.
The rs267606858(T) mutation is considered pathogenic for glycogen storage disease XV, a recessively inherited disease, based on data in ClinVar and OMIM.
All DNA chip-based direct-to-consumer tests that we (SNPedia/Promethease) know about, such as those from Ancestry or 23andMe, appear to have a very high false-positive error rate for this SNP.
ClinVar | |
---|---|
Risk | rs267606858(G;G) Rs267606858(T;T) |
Alt | rs267606858(G;G) Rs267606858(T;T) |
Reference | Rs267606858(C;C) |
Significance | Pathogenic |
Disease | Glycogen storage disease XV |
Variation | info |
Gene | GYG1 |
CLNDBN | Glycogen storage disease XV |
Reversed | 0 |
HGVS | NC_000003.11:g.148714193C>T |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000006318.5, |