rs6897876
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 1.2 | slight increase in testicular cancer risk for men |
(C;T) | 1.1 | slight increase in testicular cancer risk for men |
(T;T) | 0 | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 5 |
Position | 142308074 |
is a | snp |
is | mentioned by |
dbSNP | rs6897876 |
dbSNP (classic) | rs6897876 |
ClinGen | rs6897876 |
ebi | rs6897876 |
HLI | rs6897876 |
Exac | rs6897876 |
Gnomad | rs6897876 |
Varsome | rs6897876 |
LitVar | rs6897876 |
Map | rs6897876 |
PheGenI | rs6897876 |
Biobank | rs6897876 |
1000 genomes | rs6897876 |
hgdp | rs6897876 |
ensembl | rs6897876 |
geneview | rs6897876 |
scholar | rs6897876 |
rs6897876 | |
pharmgkb | rs6897876 |
gwascentral | rs6897876 |
openSNP | rs6897876 |
23andMe | rs6897876 |
SNPshot | rs6897876 |
SNPdbe | rs6897876 |
MSV3d | rs6897876 |
GWAS Ctlg | rs6897876 |
GMAF | 0.4986 |
Max Magnitude | 1.2 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
Testicular germ cell tumor risk I("TGCT"; i.e. testicular cancer risk) was increased 40% per copy of the major allele (C) at rs4324715 and rs6897876 (OR = 1.37, CI: 1.14–1.64; OR = 1.39, CI: 1.16–1.66, respectively), based on a genome-wide scan of 277 primarily Caucasian TGCT cases and 919 controls. Men who have two copies of the common version of the sprouty 4 SPRY4 gene have a 1.5-fold higher risk of testicular cancer than men who have two copies of the less common or minor version of the gene.[PMID 19483682]