rs113449357
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | common in clinvar |
(C;T) | 0.5 | likely to be benign |
(T;T) | 0.5 | likely to be benign |
Reference | GRCh38 38.1/141 |
Chromosome | 3 |
Position | 14139231 |
Gene | TMEM43 |
is a | snp |
is | mentioned by |
dbSNP | rs113449357 |
dbSNP (classic) | rs113449357 |
ClinGen | rs113449357 |
ebi | rs113449357 |
HLI | rs113449357 |
Exac | rs113449357 |
Gnomad | rs113449357 |
Varsome | rs113449357 |
LitVar | rs113449357 |
Map | rs113449357 |
PheGenI | rs113449357 |
Biobank | rs113449357 |
1000 genomes | rs113449357 |
hgdp | rs113449357 |
ensembl | rs113449357 |
geneview | rs113449357 |
scholar | rs113449357 |
rs113449357 | |
pharmgkb | rs113449357 |
gwascentral | rs113449357 |
openSNP | rs113449357 |
23andMe | rs113449357 |
SNPshot | rs113449357 |
SNPdbe | rs113449357 |
MSV3d | rs113449357 |
GWAS Ctlg | rs113449357 |
GMAF | 0.006428 |
Max Magnitude | 0.5 |
rs113449357, also known as c.934C>T, p.Arg312Trp and R312W, is a variant in the TMEM43 gene on chromosome 3.
There are conflicting interpretations in ClinVar of whether the minor allele of this variant is pathogenic for an unspecified form of cardiomyopathy. The first report, apparently based on a single patient, indicated it was likely to be pathogenic, but two subsequent reviews (involving more patients and controls) have concluded it is benign. It is a somewhat uncommon variant, present with a frequency of 0.01 - 0.03 depending on the population.
If you know of evidence regarding the potential pathogenicity of this variant, let us know.
ClinVar | |
---|---|
Risk | Rs113449357(T;T) |
Alt | Rs113449357(T;T) |
Reference | Rs113449357(C;C) |
Significance | Probable-non-pathogenic |
Disease | Cardiomyopathy not specified Arrhythmogenic right ventricular cardiomyopathy Cardiovascular phenotype |
Variation | info |
Gene | TMEM43 |
CLNDBN | Cardiomyopathy not specified Arrhythmogenic right ventricular cardiomyopathy, type 5 Cardiovascular phenotype Cardiomyopathy, ARVC |
Reversed | 0 |
HGVS | NC_000003.11:g.14180731C>T |
CLNSRC | ClinVar GeneDx LabCorp |
CLNACC | RCV000030555.1, RCV000039394.5, RCV000233894.2, RCV000243225.1, RCV000336793.1, |