rs121908039
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;G) | 5 | Familial Hypercholesterolemia |
(C;G) | 5 | Familial Hypercholesterolemia |
(G;G) | 0 | common in complete genomics |
Make rs121908039(A;A) |
Reference | GRCh38 38.1/141 |
Chromosome | 19 |
Position | 11105457 |
Gene | LDLR |
is a | snp |
is | mentioned by |
dbSNP | rs121908039 |
dbSNP (classic) | rs121908039 |
ClinGen | rs121908039 |
ebi | rs121908039 |
HLI | rs121908039 |
Exac | rs121908039 |
Gnomad | rs121908039 |
Varsome | rs121908039 |
LitVar | rs121908039 |
Map | rs121908039 |
PheGenI | rs121908039 |
Biobank | rs121908039 |
1000 genomes | rs121908039 |
hgdp | rs121908039 |
ensembl | rs121908039 |
geneview | rs121908039 |
scholar | rs121908039 |
rs121908039 | |
pharmgkb | rs121908039 |
gwascentral | rs121908039 |
openSNP | rs121908039 |
23andMe | rs121908039 |
SNPshot | rs121908039 |
SNPdbe | rs121908039 |
MSV3d | rs121908039 |
GWAS Ctlg | rs121908039 |
Max Magnitude | 5 |
aka c.551G>A, p.Cys184Tyr or C184Y; also known as FH Glasco and FH Rome-2; note also presence of c.551G>C (p.Cys184Ser or C184S), which is also likely to be pathogenic according to ClinVar
FH Glasco is one of the most common South Asian and non-Finnish European FH mutations in ExAC/Broad data.
Reported in ClinVar as pathogenic for familial hypercholesterolemia and therefore increased risk for coronary artery disease
ClinVar | |
---|---|
Risk | rs121908039(A;A) |
Alt | rs121908039(A;A) |
Reference | Rs121908039(G;G) |
Significance | Other |
Disease | Familial hypercholesterolemia |
Variation | info |
Gene | LDLR |
CLNDBN | Familial hypercholesterolemia |
Reversed | 0 |
HGVS | NC_000019.9:g.11216133G>A |
CLNSRC | LDLR @ LOVD OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000003937.8, |