rs12272004
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 |
| Make rs12272004(A;A) |
| Make rs12272004(A;C) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 11 |
| Position | 116733008 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs12272004 |
| dbSNP (classic) | rs12272004 |
| ClinGen | rs12272004 |
| ebi | rs12272004 |
| HLI | rs12272004 |
| Exac | rs12272004 |
| Gnomad | rs12272004 |
| Varsome | rs12272004 |
| LitVar | rs12272004 |
| Map | rs12272004 |
| PheGenI | rs12272004 |
| Biobank | rs12272004 |
| 1000 genomes | rs12272004 |
| hgdp | rs12272004 |
| ensembl | rs12272004 |
| geneview | rs12272004 |
| scholar | rs12272004 |
| rs12272004 | |
| pharmgkb | rs12272004 |
| gwascentral | rs12272004 |
| openSNP | rs12272004 |
| 23andMe | rs12272004 |
| SNPshot | rs12272004 |
| SNPdbe | rs12272004 |
| MSV3d | rs12272004 |
| GWAS Ctlg | rs12272004 |
| GMAF | 0.07576 |
| Max Magnitude | 0 |
| ? | (A;A) (A;C) (C;C) | 28 |
|---|---|---|
|
| ||
[PMID 19185284
] rs12272004 associated with alpha-tocopherol (meta-analysis p = 7.8 x 10(-10)) levels; the association was substantially weaker when adjusted for triglyceride levels (p = 0.002).
| GWAS snp | |
|---|---|
| PMID | [PMID 19060911]
|
| Trait | Cholesterol, total |
| Title | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts |
| Risk Allele | C |
| P-val | 7E-7 |
| Odds Ratio | 0.11 [NR] SD decrease |
[PMID 19474294] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.
[PMID 20502693] Genetics and beyond--the transcriptome of human monocytes and disease susceptibility.
[PMID 23452379] APOA5 genotype influences the association between 25-hydroxyvitamin D and high density lipoprotein cholesterol.
