rs1540771

minus

Geno	Mag	Summary
(A;A)	0	common in complete genomics

Make rs1540771(A;G)

Make rs1540771(G;G)

Reference

GRCh38 38.1/142

Chromosome

6

Position

466033

Gene	LOC105374875

is a	snp
is	mentioned by
dbSNP	rs1540771
dbSNP (classic)	rs1540771
ClinGen	rs1540771
ebi	rs1540771
HLI	rs1540771
Exac	rs1540771
Gnomad	rs1540771
Varsome	rs1540771
LitVar	rs1540771
Map	rs1540771
PheGenI	rs1540771
Biobank	rs1540771
1000 genomes	rs1540771
hgdp	rs1540771
ensembl	rs1540771
geneview	rs1540771
scholar	rs1540771
google	rs1540771
pharmgkb	rs1540771
gwascentral	rs1540771
openSNP	rs1540771
23andMe	rs1540771
SNPshot	rs1540771
SNPdbe	rs1540771
MSV3d	rs1540771
GWAS Ctlg	rs1540771

GMAF

0.3489

Max Magnitude

0

?

(A;A) (A;G) (G;G)

28

plos the association between rs12203592 and hair color was independent of rs1540771, a SNP between the IRF4 and EXOC2 genes previously found to be associated with hair color.

GWAS
SNP	rs1540771
PubMedID	[PMID 17952075]
Condition	Freckles
Gene	SEC5L1,IRF4
Risk Allele	A
pValue	4.00E-018
OR	1.4
95% CI	1.26-1.57

OMIM	611724
Desc	SKIN/HAIR/EYE PIGMENTATION, VARIATION IN, 8; SHEP8
Variant
Related	also

[PMID 18483556 ] A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.

[PMID 19340012 ] Genome-wide association study of tanning phenotype in a population of European ancestry.

[PMID 19474294 ] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

[PMID 19884608 ] Interactive effect of stressful life events and the serotonin transporter 5-HTTLPR genotype on posttraumatic stress disorder diagnosis in 2 independent populations.

[PMID 20585627 ] Web-based, participant-driven studies yield novel genetic associations for common traits.