rs16909898
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs16909898(A;G) |
| Make rs16909898(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 95468726 |
| Gene | LOC100507346, PTCH1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs16909898 |
| dbSNP (classic) | rs16909898 |
| ClinGen | rs16909898 |
| ebi | rs16909898 |
| HLI | rs16909898 |
| Exac | rs16909898 |
| Gnomad | rs16909898 |
| Varsome | rs16909898 |
| LitVar | rs16909898 |
| Map | rs16909898 |
| PheGenI | rs16909898 |
| Biobank | rs16909898 |
| 1000 genomes | rs16909898 |
| hgdp | rs16909898 |
| ensembl | rs16909898 |
| geneview | rs16909898 |
| scholar | rs16909898 |
| rs16909898 | |
| pharmgkb | rs16909898 |
| gwascentral | rs16909898 |
| openSNP | rs16909898 |
| 23andMe | rs16909898 |
| SNPshot | rs16909898 |
| SNPdbe | rs16909898 |
| MSV3d | rs16909898 |
| GWAS Ctlg | rs16909898 |
| GMAF | 0.101 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 20010835 ]
|
| Trait | Pulmonary function |
| Title | Meta-analyses of genome-wide assocation studies identify multiple loci associated with pulmonary function |
| Risk Allele | A |
| P-val | 5E-7 |
| Odds Ratio | 0.50 [NR] % increase |
| GWAS snp | |
|---|---|
| PMID | [PMID 23284291]
|
| Trait | Pulmonary function (interaction) |
| Title | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
| Risk Allele | |
| P-val | 8E-12 |
| Odds Ratio | NR NR |
| ClinVar | |
|---|---|
| Risk | rs16909898(G;G) |
| Alt | rs16909898(G;G) |
| Reference | Rs16909898(A;A) |
| Significance | Non-pathogenic |
| Disease | not specified |
| Variation | info |
| Gene | LOC100507346 PTCH1 |
| CLNDBN | not specified |
| Reversed | 0 |
| HGVS | NC_000009.11:g.98231008A>G |
| CLNSRC | |
| CLNACC | RCV000247840.1, |
