rs1800937

Orientation

plus

Stabilized

plus

Geno	Mag	Summary
(A;C)	6	Lynch syndrome, pathogenic mutation
(C;C)	0	common in clinvar
(C;G)	6	Lynch syndrome, pathogenic mutation
(C;T)	0	benign polymorphism
(T;T)	0	benign polymorphism

Reference

GRCh38 38.1/141

Chromosome

2

Position

47798625

Gene

MSH6

is a	snp
is	mentioned by
dbSNP	rs1800937
dbSNP (classic)	rs1800937
ClinGen	rs1800937
ebi	rs1800937
HLI	rs1800937
Exac	rs1800937
Gnomad	rs1800937
Varsome	rs1800937
LitVar	rs1800937
Map	rs1800937
PheGenI	rs1800937
Biobank	rs1800937
1000 genomes	rs1800937
hgdp	rs1800937
ensembl	rs1800937
geneview	rs1800937
scholar	rs1800937
google	rs1800937
pharmgkb	rs1800937
gwascentral	rs1800937
openSNP	rs1800937
23andMe	rs1800937
SNPshot	rs1800937
SNPdbe	rs1800937
MSV3d	rs1800937
GWAS Ctlg	rs1800937

GMAF

0.04959

Max Magnitude

6

?	(C;C) (C;T) (T;T)	28

ClinVar
Risk	rs1800937(A;A) rs1800937(G;G) Rs1800937(T;T)
Alt	rs1800937(A;A) rs1800937(G;G) Rs1800937(T;T)
Reference	Rs1800937(C;C)
Significance	Pathogenic
Disease	Lynch syndrome not provided not specified Hereditary cancer-predisposing syndrome
Variation	info
Gene	MSH6
CLNDBN	Lynch syndrome not provided not specified Hereditary cancer-predisposing syndrome
Reversed	0
HGVS	NC_000002.11:g.48025764C>A; NC_000002.11:g.48025764C>G; NC_000002.11:g.48025764C>T
CLNSRC	HGMD
CLNACC	RCV000075015.2, RCV000075016.2, RCV000485263.1, RCV000030277.4, RCV000035327.8, RCV000132355.3,