rs1953126
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 0 | normal |
(C;T) | 1.3x increased risk for rheumatoid arthritis | |
(T;T) | 1.3x increased risk for rheumatoid arthritis |
Reference | GRCh38 38.1/141 |
Chromosome | 9 |
Position | 120878222 |
Gene | PHF19 |
is a | snp |
is | mentioned by |
dbSNP | rs1953126 |
dbSNP (classic) | rs1953126 |
ClinGen | rs1953126 |
ebi | rs1953126 |
HLI | rs1953126 |
Exac | rs1953126 |
Gnomad | rs1953126 |
Varsome | rs1953126 |
LitVar | rs1953126 |
Map | rs1953126 |
PheGenI | rs1953126 |
Biobank | rs1953126 |
1000 genomes | rs1953126 |
hgdp | rs1953126 |
ensembl | rs1953126 |
geneview | rs1953126 |
scholar | rs1953126 |
rs1953126 | |
pharmgkb | rs1953126 |
gwascentral | rs1953126 |
openSNP | rs1953126 |
23andMe | rs1953126 |
SNPshot | rs1953126 |
SNPdbe | rs1953126 |
MSV3d | rs1953126 |
GWAS Ctlg | rs1953126 |
GMAF | 0.3177 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
A study of 475 Caucasian patients concluded that rs1953126, on chromosome 9q33.2, was significantly associated with rheumatoid arthritis (odds ratio 1.28, CI 1.16–1.40, trend p comb = 1.45e-06).[PMID 18648537]
[PMID 19714643] TRAF1 polymorphisms associated with rheumatoid arthritis susceptibility in Asians and in Caucasians
GWAS snp | |
---|---|
PMID | [PMID 21383967] |
Trait | |
Title | Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci |
Risk Allele | T |
P-val | 4E-11 |
Odds Ratio | None None |
[PMID 20017974] Simultaneous analysis of all single-nucleotide polymorphisms in genome-wide association study of rheumatoid arthritis.
[PMID 20017985] Adjusting for HLA-DRbeta1 in a genome-wide association analysis of rheumatoid arthritis and related biomarkers.
[PMID 20018005] Analysis of genome-wide association data by large-scale Bayesian logistic regression.
[PMID 20018022] Replication of recently identified associated single-nucleotide polymorphisms from six autoimmune diseases in Genetic Analysis Workshop 16 rheumatoid arthritis data.
[PMID 20018027] Conditional analysis of the major histocompatibility complex in rheumatoid arthritis.
[PMID 20018028] Armitage's trend test for genome-wide association analysis: one-sided or two-sided?
[PMID 20018053] A genome-wide association scan for rheumatoid arthritis data by Hotelling's T2 tests.
[PMID 20018075] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.
[PMID 20018090] Comparative analysis of different approaches for dealing with candidate regions in the context of a genome-wide association study.