rs28362263
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1.5 | Modest reduction in LDL-C and coronary risk |
(A;G) | 1.5 | Modest reduction in LDL-C and coronary risk |
(G;G) | 0 | common |
Reference | GRCh38 38.1/141 |
Chromosome | 1 |
Position | 55058182 |
Gene | PCSK9 |
is a | snp |
is | mentioned by |
dbSNP | rs28362263 |
dbSNP (classic) | rs28362263 |
ClinGen | rs28362263 |
ebi | rs28362263 |
HLI | rs28362263 |
Exac | rs28362263 |
Gnomad | rs28362263 |
Varsome | rs28362263 |
LitVar | rs28362263 |
Map | rs28362263 |
PheGenI | rs28362263 |
Biobank | rs28362263 |
1000 genomes | rs28362263 |
hgdp | rs28362263 |
ensembl | rs28362263 |
geneview | rs28362263 |
scholar | rs28362263 |
rs28362263 | |
pharmgkb | rs28362263 |
gwascentral | rs28362263 |
openSNP | rs28362263 |
23andMe | rs28362263 |
SNPshot | rs28362263 |
SNPdbe | rs28362263 |
MSV3d | rs28362263 |
GWAS Ctlg | rs28362263 |
GMAF | 0.02158 |
Max Magnitude | 1.5 |
rs28362263, also known as A443T, is a SNP in the PCSK9 gene.
It has been reported in several studies (including [PMID 16912035] and [PMID 16465619]) to be a loss-of-function mutation leading to modestly (~3%) lowered LDL-C levels and thereby somewhat reduced risk for coronary events.
[PMID 20031607] Longitudinal association of PCSK9 sequence variations with low-density lipoprotein cholesterol levels: the Coronary Artery Risk Development in Young Adults Study.
ClinVar | |
---|---|
Risk | Rs28362263(A;A) |
Alt | Rs28362263(A;A) |
Reference | Rs28362263(G;G) |
Significance | Other |
Disease | not specified Familial hypobetalipoproteinemia Familial hypercholesterolemia Hypercholesterolemia |
Variation | info |
Gene | PCSK9 |
CLNDBN | not specified Familial hypobetalipoproteinemia Familial hypercholesterolemia Hypercholesterolemia, autosomal dominant, 3 |
Reversed | 0 |
HGVS | NC_000001.10:g.55523855G>A |
CLNSRC | |
CLNACC | RCV000241843.1, RCV000309633.1, RCV000362210.1, RCV000417327.1, |