rs28414810
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | >2.4x risk | |
| (C;G) | 2.4x risk | |
| (G;G) | common |
| Reference | GRCh38 38.1/141 |
| Chromosome | X |
| Position | 1294564 |
| Gene | CSF2RA |
| is a | snp |
| is | mentioned by |
| dbSNP | rs28414810 |
| dbSNP (classic) | rs28414810 |
| ClinGen | rs28414810 |
| ebi | rs28414810 |
| HLI | rs28414810 |
| Exac | rs28414810 |
| Gnomad | rs28414810 |
| Varsome | rs28414810 |
| LitVar | rs28414810 |
| Map | rs28414810 |
| PheGenI | rs28414810 |
| Biobank | rs28414810 |
| 1000 genomes | rs28414810 |
| hgdp | rs28414810 |
| ensembl | rs28414810 |
| geneview | rs28414810 |
| scholar | rs28414810 |
| rs28414810 | |
| pharmgkb | rs28414810 |
| gwascentral | rs28414810 |
| openSNP | rs28414810 |
| 23andMe | rs28414810 |
| SNPshot | rs28414810 |
| SNPdbe | rs28414810 |
| MSV3d | rs28414810 |
| GWAS Ctlg | rs28414810 |
| GMAF | 0.337 |
| Max Magnitude | 0 |
rs28414810, located in intron 8 of the CSF2RA gene, is part of a haplotype block that has been reported in a whole genome association study to be associated with schizophrenia. (The other SNP in this block is rs28694718.)
The risk allele (oriented to the dbSNP entry) is most likely (G), but note that the orientation should be independently confirmed; the odds ratio associated with this allele is 2.40. [PMID 17522711]
[PMID 19197363
] A genome-wide investigation of SNPs and CNVs in schizophrenia.
