rs28934577
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | |
(A;T) | 6 | pathogenic/causal mutation for Li-Fraumeni syndrome |
(G;T) | 7 | Li-Fraumeni Syndrome (predicted) |
(T;T) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 17 |
Position | 7674193 |
Gene | TP53 |
is a | snp |
is | mentioned by |
dbSNP | rs28934577 |
dbSNP (classic) | rs28934577 |
ClinGen | rs28934577 |
ebi | rs28934577 |
HLI | rs28934577 |
Exac | rs28934577 |
Gnomad | rs28934577 |
Varsome | rs28934577 |
LitVar | rs28934577 |
Map | rs28934577 |
PheGenI | rs28934577 |
Biobank | rs28934577 |
1000 genomes | rs28934577 |
hgdp | rs28934577 |
ensembl | rs28934577 |
geneview | rs28934577 |
scholar | rs28934577 |
rs28934577 | |
pharmgkb | rs28934577 |
gwascentral | rs28934577 |
openSNP | rs28934577 |
23andMe | rs28934577 |
SNPshot | rs28934577 |
SNPdbe | rs28934577 |
MSV3d | rs28934577 |
GWAS Ctlg | rs28934577 |
Max Magnitude | 7 |
rs28934577, also known as Leu257Gln or L257Q, is a SNP in the p53 TP53 tumor suppressor gene.
The rare rs28934577(A) allele is associated with predisposition to cancer in the form of Li-Fraumeni syndrome 1.[PMID 8134127]
ClinVar annotates this as both pathogenic, and, "likely pathogenic"; see also OMIM 191170.0028
This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about.[PMID 23788249]
ClinVar | |
---|---|
Risk | Rs28934577(A;A) rs28934577(G;G) |
Alt | Rs28934577(A;A) rs28934577(G;G) |
Reference | Rs28934577(T;T) |
Significance | Pathogenic |
Disease | Hereditary cancer-predisposing syndrome Li-Fraumeni-like syndrome Li-Fraumeni syndrome |
Variation | info |
Gene | TP53 |
CLNDBN | Hereditary cancer-predisposing syndrome Li-Fraumeni-like syndrome Li-Fraumeni syndrome |
Reversed | 1 |
HGVS | NC_000017.10:g.7577511A>C; NC_000017.10:g.7577511A>T |
CLNSRC | UniProtKB (protein) OMIM Allelic Variant |
CLNACC | RCV000130981.2, RCV000013171.20, RCV000469142.1, |