rs35677470
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1.3 | Higher risk for scleroderma |
(A;G) | 1.2 | 2x higher risk for scleroderma |
(G;G) | 0 | normal/common |
Reference | GRCh38 38.1/142 |
Chromosome | 3 |
Position | 58197909 |
Gene | DNASE1L3 |
is a | snp |
is | mentioned by |
dbSNP | rs35677470 |
dbSNP (classic) | rs35677470 |
ClinGen | rs35677470 |
ebi | rs35677470 |
HLI | rs35677470 |
Exac | rs35677470 |
Gnomad | rs35677470 |
Varsome | rs35677470 |
LitVar | rs35677470 |
Map | rs35677470 |
PheGenI | rs35677470 |
Biobank | rs35677470 |
1000 genomes | rs35677470 |
hgdp | rs35677470 |
ensembl | rs35677470 |
geneview | rs35677470 |
scholar | rs35677470 |
rs35677470 | |
pharmgkb | rs35677470 |
gwascentral | rs35677470 |
openSNP | rs35677470 |
23andMe | rs35677470 |
SNPshot | rs35677470 |
SNPdbe | rs35677470 |
MSV3d | rs35677470 |
GWAS Ctlg | rs35677470 |
Max Magnitude | 1.3 |
rs35677470, also known as R206C, is a missense SNP in the deoxyribonuclease I-like 3 [DNASEIL3] gene on chromosome 3.
A study of ~500 Australian patients with scleroderma concluded that the rarer rs35677470(A) allele was associated with higher risk for anti-centromere antibody (ACA) positive cases (odds ratio 2.36, p=2.3x10e-10). There was no risk associated with ACA-negative scleroderma.[PMID 25332064]
[PMID 33455918] Arg206Cys substitution in DNASE1L3 causes a defect in DNASE1L3 protein secretion that confers risk of systemic lupus erythematosus.