rs42490
From SNPedia
Orientation | plus |
Stabilized | plus |
Make rs42490(A;A) |
Make rs42490(A;G) |
Make rs42490(G;G) |
Reference | GRCh38 38.1/141 |
Chromosome | 8 |
Position | 89766285 |
Gene | RIPK2 |
is a | snp |
is | mentioned by |
dbSNP | rs42490 |
dbSNP (classic) | rs42490 |
ClinGen | rs42490 |
ebi | rs42490 |
HLI | rs42490 |
Exac | rs42490 |
Gnomad | rs42490 |
Varsome | rs42490 |
LitVar | rs42490 |
Map | rs42490 |
PheGenI | rs42490 |
Biobank | rs42490 |
1000 genomes | rs42490 |
hgdp | rs42490 |
ensembl | rs42490 |
geneview | rs42490 |
scholar | rs42490 |
rs42490 | |
pharmgkb | rs42490 |
gwascentral | rs42490 |
openSNP | rs42490 |
23andMe | rs42490 |
SNPshot | rs42490 |
SNPdbe | rs42490 |
MSV3d | rs42490 |
GWAS Ctlg | rs42490 |
GMAF | 0.4343 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
Variant in the RIPK2 gene associated with a reduced risk of leprosy in Asians, according to the 23andMe blog. The protective allele is A, and the odds ratio is 0.76.
GWAS snp | |
---|---|
PMID | [PMID 20018961] |
Trait | Leprosy |
Title | Genomewide Association Study of Leprosy |
Risk Allele | G |
P-val | 1E-16 |
Odds Ratio | 1.32 [1.23-1.41] |
[PMID 22504414] Association between C13ORF31, NOD2, RIPK2 and TLR10 polymorphisms and urothelial bladder cancer.