rs522162
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs522162(A;G) |
| Make rs522162(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 31952140 |
| Gene | CFB, NELFE |
| is a | snp |
| is | mentioned by |
| dbSNP | rs522162 |
| dbSNP (classic) | rs522162 |
| ClinGen | rs522162 |
| ebi | rs522162 |
| HLI | rs522162 |
| Exac | rs522162 |
| Gnomad | rs522162 |
| Varsome | rs522162 |
| LitVar | rs522162 |
| Map | rs522162 |
| PheGenI | rs522162 |
| Biobank | rs522162 |
| 1000 genomes | rs522162 |
| hgdp | rs522162 |
| ensembl | rs522162 |
| geneview | rs522162 |
| scholar | rs522162 |
| rs522162 | |
| pharmgkb | rs522162 |
| gwascentral | rs522162 |
| openSNP | rs522162 |
| 23andMe | rs522162 |
| SNPshot | rs522162 |
| SNPdbe | rs522162 |
| MSV3d | rs522162 |
| GWAS Ctlg | rs522162 |
| GMAF | 0.09963 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
association with age-related macular degeneration (ARMD) [PMID 16518403
]
risk allele said to be (A), in dbSNP orientation (ref: [1]
Navigenics apparently uses rs522162 as a proxy (substitute) for rs641153
[PMID 20385826] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).
| GWAS snp | |
|---|---|
| PMID | [PMID 23577725]
|
| Trait | Age-related macular degeneration |
| Title | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
| Risk Allele | |
| P-val | 2E-10 |
| Odds Ratio | 2.33 [1.82-3.03] |
