rs5400

minus

Geno	Mag	Summary
(C;C)	0.1	normal sugar consumption
(C;T)	1.7	significantly higher sugar consumption?
(T;T)	1.8	significantly higher sugar consumption

Reference

GRCh38 38.1/142

Chromosome

3

Position

171014511

Gene

SLC2A2

is a	snp
is	mentioned by
dbSNP	rs5400
dbSNP (classic)	rs5400
ClinGen	rs5400
ebi	rs5400
HLI	rs5400
Exac	rs5400
Gnomad	rs5400
Varsome	rs5400
LitVar	rs5400
Map	rs5400
PheGenI	rs5400
Biobank	rs5400
1000 genomes	rs5400
hgdp	rs5400
ensembl	rs5400
geneview	rs5400
scholar	rs5400
google	rs5400
pharmgkb	rs5400
gwascentral	rs5400
openSNP	rs5400
23andMe	rs5400
SNPshot	rs5400
SNPdbe	rs5400
MSV3d	rs5400
GWAS Ctlg	rs5400

GMAF

0.1873

Max Magnitude

1.8

?

(C;C) (C;T) (T;T)

28

[PMID 18349384] rs5400(T;T) carriers had a significantly higher intake of sugars

blog discussion

[PMID 18678618 ] Comprehensive association study of type 2 diabetes and related quantitative traits with 222 candidate genes.

[PMID 20066028 ] Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels.

[PMID 20142250 ] Diabetes genes and prostate cancer in the Atherosclerosis Risk in Communities study.

[PMID 21283750 ] Studies of the association of Arg72Pro of tumor suppressor protein p53 with type 2 diabetes in a combined analysis of 55,521 Europeans.

Food Preference

ClinVar
Risk	Rs5400(T;T)
Alt	Rs5400(T;T)
Reference	Rs5400(C;C)
Significance	Other
Disease	not specified Fanconi-Bickel syndrome
Variation	info
Gene	SLC2A2
CLNDBN	not specified Fanconi-Bickel syndrome
Reversed	1
HGVS	NC_000003.11:g.170732300G>A
CLNSRC	UniProtKB (protein)
CLNACC	RCV000118387.4, RCV000370969.1,

[PMID 26112465] GLUT2 and TAS1R2 Polymorphisms and Susceptibility to Dental Caries

[PMID 31728565 ] Plasma ascorbic acid and the risk of islet autoimmunity and type 1 diabetes: the TEDDY study.